I2792

FASTA

Metadata

Reference

Data

identifier	I2792
alternative_identifiers	['GEN64']
country	Croatia
continent	Europe
region	Balkans
culture	Croatia_Vucedol
epoch	Copper Age
group	CABA
comment	-
latitude	45.34000015258789
longitude	19.059999465942383
sex	M
site	Vucedol Tell
site_detail	-
mt_hg	T2c2
ychr_hg	G2a2a1a2a
year_from	-2872
year_to	-2582
date_detail	2872-2582 calBCE (4130±35 BP, Poz-90126)
bp	4130±35
c14_lab_code	Poz-90126
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['G:CTS1283:7309873T->G', 'G:CTS2357:14273557C->T', 'G:CTS10026:19215139A->T', 'G:CTS11331:23074190A->G', 'G:F1131:8240725C->T', 'G:M3450:6931141C->G', 'G:M3468:7744050T->C', 'G:M3597:21865624G->A', 'G:M3599:21939157G->A', 'G:CTS4101:15397649A->G', 'G:CTS10721:22729194C->T', 'G:PF2836:6478903G->A', 'G2a2a1a2a:PF3237:17017831G->A', 'G2a2a:PF3181:21808944C->A', 'G2a:CTS11463:23122426G->A', 'G2a2a1:PF3148:7816492G->A']
mitopathos	[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '146C', 'position': 146, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Absence of Endometriosis']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '3394C', 'position': 3394, 'status': 'Reported / Population-dependent', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Diabetes / CPTdeficiency / high altitude adaptation']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}, {'allele': '6261A', 'position': 6261, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CO1'], 'diseases': ['Prostate Cancer / LHON']}]