I3136
FASTA
Metadata
Reference
Data
| identifier | I3136 |
|---|---|
| alternative_identifiers | ['ORC_III_21.3'] |
| country | Great Britain |
| continent | Europe |
| region | British Isles |
| culture | Scotland_N |
| epoch | Neolithic |
| group | NEBI |
| comment | - |
| latitude | 56.4033317565918 |
| longitude | -5.478055953979492 |
| sex | F |
| site | Raschoille Cave, Oban, Argyll and Bute, Scotland |
| site_detail | - |
| mt_hg | H1+16189 |
| ychr_hg | - |
| year_from | -3520 |
| year_to | -3365 |
| date_detail | 3520-3365 calBCE (4665±30 BP, PSUAMS-2069) |
| bp | 4665±30 |
| c14_lab_code | PSUAMS-2069 |
| c14_sample_tag | True |
| c14_layer_tag | - |
| avg_coverage | 542.6589965820312 |
| sequence_source | bam |
| reference | Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link) |
| data_link | http://www.ebi.ac.uk/ena/data/view/PRJEB23635 |
| ychr_snps | - |
| mitopathos | [{'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '3010A', 'position': 3010, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR2'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine / high altitude disease risk factor']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}] |