I3256

FASTA

Metadata

Reference

Data

identifier I3256
alternative_identifiers ['TRM10', 'skeleton 3384']
country Great Britain
continent Europe
region British Isles
culture Bell Beaker
epoch Bronze Age
group BBC
comment 2-3d_rel_I3255
latitude 52.16999816894531
longitude 0.10000000149011612
sex M
site Trumpington Meadows, Cambridge, England
site_detail -
mt_hg T2b
ychr_hg R1b1a1a2a1a2c1
year_from -2203
year_to -2029
date_detail 2203-2029 calBCE (3722±31 BP, SUERC-49483)
bp 3722±31
c14_lab_code SUERC-49483
c14_sample_tag True
c14_layer_tag -
avg_coverage 603.6640014648438
sequence_source bam
reference Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps -
mitopathos [{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}]