I3256

FASTA

Metadata

Reference

Data

identifier	I3256
alternative_identifiers	['TRM10', 'skeleton 3384']
country	Great Britain
continent	Europe
region	British Isles
culture	Bell Beaker
epoch	Bronze Age
group	BBC
comment	2-3d_rel_I3255
latitude	52.16999816894531
longitude	0.10000000149011612
sex	M
site	Trumpington Meadows, Cambridge, England
site_detail	-
mt_hg	T2b
ychr_hg	R1b1a1a2a1a2c1
year_from	-2203
year_to	-2029
date_detail	2203-2029 calBCE (3722±31 BP, SUERC-49483)
bp	3722±31
c14_lab_code	SUERC-49483
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	603.6640014648438
sequence_source	bam
reference	Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link	http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps	-
mitopathos	[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}]