I3272

FASTA

Metadata

Reference

Data

identifier	I3272
alternative_identifiers	['1.-K11:19.18/17.17/14.17', 'BAR26;M10-76']
country	Spain
continent	Europe
region	Iberia
culture	N_Iberia_CA
epoch	Copper Age
group	CAIB
comment	-
latitude	42.56999969482422
longitude	-2.549999952316284
sex	M
site	La Chabola de la Hechicera, Alava, Basque country
site_detail	-
mt_hg	X2b+226
ychr_hg	I2a2
year_from	-3263
year_to	-2903
date_detail	3263-2903 calBCE (4380±40 BP, Beta-288933)
bp	4380±40
c14_lab_code	Beta-288933
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	45.0
sequence_source	bam
reference	Lipson et al. 2017. Parallel palaeogenomic transects reveal complex genetic history of early European farmers. Nature, 551(7680), 368-372. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22629
ychr_snps	['I2c:L596:14197631G->A;I2c:L597:18887888T->A;I2c:PF3893:8571993T->C;I2c:S6631:8634040C->A;I2:M438:16638804A->G;I:CTS10058:19233673A->G;I:CTS10941:22845794A->G;I:CTS11540:23156725C->T;I:CTS1800:14073053G->A;I:CTS2193:14214481G->T;I:CTS2387:14286853T->C;I:CTS2514:14337364T->C;I:CTS2536:14352669G->A;I:CTS3384:14884659A->C;I:CTS4088:15389836T->C;I:CTS4209:15479899T->A;I:CTS4273:15536870C->T;I:CTS48:2688442T->A;I:CTS5764:16471254A->G;I:CTS6265:16780748C->G;I:CTS674:6943522C->T;I:CTS6751:17090238C->G;I:CTS7469:17497181C->A;I:CTS7502:17511797A->G;I:CTS7831:17692855T->A;I:CTS8420:18018313C->A;I:CTS8963:18582617C->T;I:FGC2412:21689728A->G;I:FGC2413:8262092C->T;I:FGC2415:13835003T->C;I:FI2:8382265C->G;I:L1197:14974451C->T;I:L503:21359407C->G;I:L578:8267857G->A;I:L758:8536868C->G;I:L846:7856500C->T;I:PF3627.2:6662712C->T;I:PF3640:7681156T->A;I:PF3641:7688470T->C;I:PF3660:8466652G->A;I:PF3661:8484606C->A;I:PF3665:8643763A->G;I:PF3677:9891668G->A;I:PF3794:21067903C->T;I:PF3796:21119888G->T;I:PF3833:22485425A->T;I:YSC0000272:22115103G->A;I:Z16987:22243817A->Ghet']
mitopathos	-

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