| identifier |
I3498 |
| alternative_identifiers |
['GEN71'] |
| country |
Croatia |
| continent |
Europe |
| region |
Balkans |
| culture |
Starcevo |
| epoch |
Neolithic |
| group |
NEBA |
| comment |
- |
| latitude |
45.7599983215332 |
| longitude |
18.56999969482422 |
| sex |
M |
| site |
Beli Manastir-Popova zemlja |
| site_detail |
- |
| mt_hg |
U8b1b1 |
| ychr_hg |
C |
| year_from |
-5837 |
| year_to |
-5659 |
| date_detail |
5837-5659 calBCE (6850±40 BP, Poz-90129) |
| bp |
6850±40 |
| c14_lab_code |
Poz-90129 |
| c14_sample_tag |
True |
| c14_layer_tag |
- |
| avg_coverage |
- |
| sequence_source |
bam |
| reference |
Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203.
(link)
|
| data_link |
https://www.ebi.ac.uk/ena/data/view/PRJEB22652
|
| ychr_snps |
['C:CTS11598:23185632A->G', 'C:F1804:14603298C->T', 'C:F2678:18030738C->T', 'C:F3043:19411754G->A', 'C:F3395:23031841G->A', 'C:Y1767:21186558A->G', 'C:Z3986:9076205C->T', 'C:Z18049.2:21532389G->T', 'C:CTS4676:15762839A->G', 'C:F1044:7671399A->G', 'C:F1727:14206892C->T', 'C:F2253:16757900C->T', 'C:F2606:17820514C->T', 'C:F2869:18843140C->T', 'C:F2969:19182853C->G', 'C:F3462:23553006C->T', 'C:F3537:23769373A->G', 'C:Y2798:13865051G->T', 'C:Y2799:21875538T->C', 'C:Y6691:15896404A->G', 'C:Z4004:13228027G->T', 'C:Z7177:8668533C->T', 'C:CTS3151:14685840C->T', 'C:CTS5813:16490115G->A', 'C:CTS7930:17748163T->C', 'C:F1871:14954047C->T', 'C:F3388:23020085A->T', 'C:V1234:7584247G->C', 'C:CTS4032:15344716A->C', 'C:CTS10271:19361507G->A', 'C:Z7785:13643760C->T']
|
| mitopathos |
[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16183C', 'position': 16183, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]
|