| identifier |
I3499 |
| alternative_identifiers |
['GEN72'] |
| country |
Croatia |
| continent |
Europe |
| region |
Balkans |
| culture |
Croatia_Vucedol |
| epoch |
Copper Age |
| group |
CABA |
| comment |
- |
| latitude |
45.7599983215332 |
| longitude |
18.56999969482422 |
| sex |
M |
| site |
Beli Manastir-Popova zemlja |
| site_detail |
- |
| mt_hg |
T2e |
| ychr_hg |
R1b1a1a2a2 |
| year_from |
-2884 |
| year_to |
-2666 |
| date_detail |
2884-2666 calBCE (4176±28 BP, BRAMS-1304) |
| bp |
4176±28 |
| c14_lab_code |
BRAMS-1304 |
| c14_sample_tag |
True |
| c14_layer_tag |
- |
| avg_coverage |
- |
| sequence_source |
bam |
| reference |
Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203.
(link)
|
| data_link |
https://www.ebi.ac.uk/ena/data/view/PRJEB22652
|
| ychr_snps |
['R:L1347:22818334C->T', 'R1:CTS5611:16394489T->G', 'R1:L875:16742224A->G', 'R:CTS8311:17930099C->A', 'R:F82:7548900G->A', 'R:M651:9889199G->A', 'R1b1a1a2:L150.1:10008791C->T', 'R:P224:17285993C->T', 'R1b1a:FGC36:13822833G->T', 'R1:P231:9989615A->G', 'R:CTS7876:17722802G->A', 'R:F63:7177189G->A', 'R:F295:15594523A->G', 'R:FGC1168:15667208G->C', 'R:M734:18066156C->T', 'R:P227:21409706G->C', 'R1b1:L1349:22722580T->C', 'R1b1a1a:CTS3876:15239181G->C', 'R1b1a1a:CTS7904:17732408T->C', 'R1b:M343:2887824C->A', 'R1b1a1a:CTS9018:18617596C->T', 'R1b1a1a2:CTS623:6912992T->G', 'R1b1a1a2:CTS11468:23124367G->T', 'R1b1a1a2:CTS12478:28590278G->A', 'R1b1a1a2:L773:7220727A->G', 'R1b1a1a2:PF6475:17986687C->A', 'R1b1a1a2:PF6482:18381735A->G', 'R1b1a1a2:PF6495:20828795G->A', 'R1b1a:A702:10038192G->A', 'R1b1:CTS2134:14193384G->A', 'R1b1a1a2a2:Z2105:15747432C->A', 'R1b1:CTS2229:14226692T->A', 'R1b1a1a2:CTS10834:22796697T->C', 'R1b1a1a2:PF6430:8070532T->A', 'R1b1a1a2:PF6434:8411202A->G', 'R1b1a1a2:PF6438:9464078C->T', 'R1b1a1a:PF6451:14116584T->A', 'R1b1a:FGC41:7900883C->A', 'R1b1a:FGC35:18407611C->T']
|
| mitopathos |
[{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}]
|