I3588

identifier	I3588
alternative_identifiers	['Grave 2']
country	Germany
continent	Europe
region	central Europe
culture	Bell Beaker
epoch	Copper Age
group	BBC
comment	-
latitude	48.88330078125
longitude	12.53320026397705
sex	M
site	Alburg-Lerchenhaid, Spedition Häring, Stkr. Straubing, Bavaria
site_detail	-
mt_hg	H1e1a
ychr_hg	R1b1a1a2a1a
year_from	-2300
year_to	-2150
date_detail	2300-2150 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	350.9339904785156
sequence_source	bam
reference	Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link	http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps	-
mitopathos	[{'allele': '3010A', 'position': 3010, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR2'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine / high altitude disease risk factor']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '5460A', 'position': 5460, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND2'], 'diseases': ['AD / PD / LHON']}, {'allele': '8821G', 'position': 8821, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ATP6'], 'diseases': ['Possible LHON helper variant']}]