I3607

FASTA

Metadata

Reference

Data

identifier I3607
alternative_identifiers ['Obj. 335', 'grave 7']
country Germany
continent Europe
region central Europe
culture Bell Beaker
epoch Copper Age
group BBC
comment -
latitude 48.66389846801758
longitude 13.073599815368652
sex M
site K├╝nzing-Bruck, Lkr. Deggendorf, Bavaria
site_detail -
mt_hg W3a1
ychr_hg R1b1a1a
year_from -2350
year_to -2250
date_detail 2350-2250 BCE
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag -
avg_coverage 15.110400199890137
sequence_source bam
reference Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps -
mitopathos [{'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '15784C', 'position': 15784, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['POAG - potential for association']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '5460A', 'position': 5460, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND2'], 'diseases': ['AD / PD / LHON']}]