I3875
FASTA
Metadata
Reference
Data
| identifier | I3875 |
|---|---|
| alternative_identifiers | ['Vil-Lauz-1316'] |
| country | France |
| continent | Europe |
| region | southern Europe |
| culture | Bell Beaker |
| epoch | Copper Age |
| group | BBC |
| comment | - |
| latitude | 44.47600173950195 |
| longitude | 6.36899995803833 |
| sex | M |
| site | Villard, Lauzet-Ubaye |
| site_detail | - |
| mt_hg | H1e |
| ychr_hg | R1b1a1a2a1a2b1 |
| year_from | -2133 |
| year_to | -1946 |
| date_detail | 2133-1946 calBCE (3655±25 BP, PSUAMS-1834) |
| bp | 3655±25 |
| c14_lab_code | PSUAMS-1834 |
| c14_sample_tag | True |
| c14_layer_tag | - |
| avg_coverage | 423.9939880371094 |
| sequence_source | bam |
| reference | Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link) |
| data_link | http://www.ebi.ac.uk/ena/data/view/PRJEB23635 |
| ychr_snps | - |
| mitopathos | [{'allele': '3010A', 'position': 3010, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR2'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine / high altitude disease risk factor']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '5460A', 'position': 5460, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND2'], 'diseases': ['AD / PD / LHON']}] |