| identifier |
I3947 |
| alternative_identifiers |
['ZC2', 'SJ100', 'PU387', 'SJ110'] |
| country |
Croatia |
| continent |
Europe |
| region |
Balkans |
| culture |
Cardial Ware |
| epoch |
Neolithic |
| group |
NEBA |
| comment |
- |
| latitude |
43.59000015258789 |
| longitude |
16.649999618530273 |
| sex |
M |
| site |
Zemunica Cave |
| site_detail |
- |
| mt_hg |
K1b1a |
| ychr_hg |
C1a2 |
| year_from |
-5986 |
| year_to |
-5786 |
| date_detail |
5986-5786 calBCE (7000±40 BP, PSUAMS-2223) |
| bp |
7000±40 |
| c14_lab_code |
PSUAMS-2223 |
| c14_sample_tag |
True |
| c14_layer_tag |
- |
| avg_coverage |
- |
| sequence_source |
bam |
| reference |
Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203.
(link)
|
| data_link |
https://www.ebi.ac.uk/ena/data/view/PRJEB22652
|
| ychr_snps |
['C1a2:V20:6845955G->A', 'C1:CTS6773:17100606C->T', 'C:CTS2955:14587658T->C', 'C:CTS6266:16780809G->A', 'C:CTS7301:17412198T->C', 'C:CTS10720:22726491C->T', 'C:CTS11598:23185632A->G', 'C:F847:6879365C->T', 'C:F1804:14603298C->T', 'C:F2678:18030738C->T', 'C:F3043:19411754G->A', 'C:F3395:23031841G->A', 'C:F3703:16409159C->A', 'C:Y1767:21186558A->G', 'C:Z3958:7869808C->T', 'C:Z3986:9076205C->T', 'C:Z4099:22168468A->G', 'C1:F3393:23023974C->A', 'C:CTS3223:14755880C->T', 'C:CTS4676:15762839A->G', 'C:CTS11544:23158264C->G', 'C:CTS11820:23294948T->C', 'C:F1241:8482631G->C', 'C:F1288:8537273G->A', 'C:F1367:8640245C->G', 'C:F1911:15097043C->T', 'C:F2253:16757900C->T', 'C:F2434:17270957A->C', 'C:F2449:17341195G->T', 'C:F2606:17820514C->T', 'C:F2869:18843140C->T', 'C:F2888:18890063C->T', 'C:F2969:19182853C->G', 'C:F3319:22575539A->G', 'C:F3462:23553006C->T', 'C:F3537:23769373A->G', 'C:F3712:17957903T->C', 'C:F3719:22937380C->A', 'C:Y2798:13865051G->T', 'C:Y2799:21875538T->C', 'C:Y6691:15896404A->G', 'C:Z3977:8673832C->T', 'C:Z4004:13228027G->T', 'C:Z4014:13656195T->A', 'C:Z4073:21566042C->T', 'C:Z4083:21809035G->A', 'C:Z7177:8668533C->T', 'C:CTS2377:14281450G->A', 'C:CTS5813:16490115G->A', 'C:CTS7930:17748163T->C', 'C:CTS10707:22714249G->A', 'C:CTS10782:22775162C->A', 'C:IMS-JST029149:2803297C->T', 'C:Y4496:8127435A->G', 'C:CTS3221:14742373C->T', 'C:CTS10442:19457443A->G', 'C:F2858:18832816T->C', 'C:P255:8685038G->A', 'C:V1234:7584247G->C', 'C1a2:V86:6909957G->A', 'C:CTS2550:14359235G->A', 'C:F2485:17457010C->T', 'C:Z4059:21291275G->A']
|
| mitopathos |
[{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '15257A', 'position': 15257, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['LHON']}, {'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '5913A', 'position': 5913, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CO1'], 'diseases': ['Prostate Cancer / hypertension']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]
|