I3948

FASTA

Metadata

Reference

Data

identifier I3948
alternative_identifiers ['ZC3', 'PZ103-35', '103-35']
country Croatia
continent Europe
region Balkans
culture Cardial Ware
epoch Neolithic
group NEBA
comment -
latitude 43.59000015258789
longitude 16.649999618530273
sex M
site Zemunica Cave
site_detail -
mt_hg N1a1
ychr_hg E1b1b1a1b1
year_from -6005
year_to -5814
date_detail 6005-5814 calBCE (7030±40 BP, PSUAMS-2224)
bp 7030±40
c14_lab_code PSUAMS-2224
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps ['E1b1b1a1b1:CTS3287:14801129A->G', 'E1b1b1a1b1:CTS5291:16189080T->G', 'E1b1b1a1b1:CTS5527:16345952A->G', 'E1b1b1a1b1:CTS7273:17396160C->T', 'E1b1b1a1b1:L618:15339697T->C', 'E1b1b1a1b1:PF2215:8262442A->G', 'E1b1b1a1b1:PF2246:22073053G->A', 'E1b1b1a:CTS8899:18538216C->A', 'E1b1b1a:L546:17516070C->T', 'E1b1b1a:PF2108:7804308C->T', 'E1b1b1a:PF2114:8232450C->A', 'E1b1b1a:PF2173:21036413C->T', 'E1b1b1a:PF2178:21583211C->A', 'E1b1b1a:PF2188:22080316G->A', 'E1b1b1:CTS2216:14221285G->T', 'E1b1b1:CTS3637:15089380A->G', 'E1b1b1:CTS6298:16808859A->G', 'E1b1b1:CTS6834:17138251A->G', 'E1b1b1:CTS7154:17325559G->T', 'E1b1b1:CTS9956:19170454C->T', 'E1b1b1:CTS10184:19316389A->T', 'E1b1b1:L796:21358197T->C', 'E1b1b1:M5041:21491115A->G', 'E1b1b1:M5047:21977569C->T', 'E1b1b1:M5078:7721674G->A', 'E1b1b1:M5108:8880108G->A', 'E1b1b1:M5322:22181731G->A', 'E1b1b1:M5360:23618826C->T', 'E1b1b1:PF1575:9389773T->G', 'E1b1b1:PF1619:13848122T->C', 'E1b1b:CTS225:2827409C->T', 'E1b1b:CTS8479.1:18045601C->T', 'E1b1b:CTS9049:18637397C->G', 'E1b1b:CTS10513:19503700T->C', 'E1b1b:CTS10679:22700429G->A', 'E1b1b:CTS11223:23021729G->A', 'E1b1b:L336:21903853G->A', 'E1b1b:M5082:7905833C->T', 'E1b1b:M5083:7906010A->G', 'E1b1b:M5101:8692771C->T', 'E1b1b:M5305:21658631G->C', 'E1b1:P2:21610831G->A', 'E1:CTS955:7104553C->T', 'E1:CTS5913:16550700G->A', 'E1:CTS9083:18662674G->A', 'E1:CTS9753:19058376G->A', 'E:CTS860:7052802A->T', 'E:CTS2893:14545105G->A', 'E:CTS3199:14718400A->G', 'E:CTS4685:15768559C->T', 'E:CTS4994:15945309G->A', 'E:CTS5316:16203354A->G', 'E:CTS6755:17092499G->T', 'E:CTS8631:18118658C->G', 'E:CTS10296:19379113T->C', 'E:CTS10344:19414935G->T', 'E:CTS10894:22823374A->C', 'E:CTS11504:23142339C->G', 'E:L339:6931856C->Thet', 'E:L504:21385724C->G', 'E:L507:22688731G->C', 'E:L614:23249378C->T', 'E:M40:2663943C->T', 'E:M5382:6631743C->A', 'E:M5406:7913358G->A', 'E:M5416:8469322C->T', 'E:M5417:8532844C->T', 'E:M5418:8612630C->G', 'E:M5422:8703052T->G', 'E:M5425:8799243T->C', 'E:M5431:9394763A->T', 'E:M5527:21256219G->A', 'E:M5529:21314704T->C', 'E:M5533:21408046G->C', 'E:M5545:21747107T->C', 'E:M5569:24399592C->T', 'E:M5571:24437979C->T', 'E:P154:19500107G->T', 'E:P169:22918577C->T', 'E:P171:23443971G->T', 'E:P172:6965215C->T', 'E:P174:15809326G->A', 'E:PF1608:13559017G->T', 'E:PF1620:13883812C->A', 'E:PF1843:22270345G->A', 'E:PF1844:22270687T->G', 'E:PF1864:22469799A->C', 'E:Z15669:13424256G->T', 'E:Z15670:13470384C->G', 'E:Z15673:13828327G->A', 'E:Z15674:13841166G->A', 'E:Z15681:22271529A->C']
mitopathos [{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '15043A', 'position': 15043, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['MDD-associated']}, {'allele': '3336C', 'position': 3336, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-ND1'], 'diseases': ['Carotid atherosclerosis risk']}, {'allele': '669C', 'position': 669, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-RNR1'], 'diseases': ['DEAF']}]