I4069

FASTA

Metadata

Reference

Data

identifier	I4069
alternative_identifiers	['skeleton 229-M4']
country	The Netherlands
continent	Europe
region	western Europe
culture	Bell Beaker
epoch	Copper Age
group	BBC
comment	-
latitude	52.73356246948242
longitude	5.096182823181152
sex	M
site	De Tuithoorn, Oostwoud, Noord-Holland
site_detail	-
mt_hg	U5a1a1
ychr_hg	R1b1a1a2a1a2
year_from	-2188
year_to	-1887
date_detail	2188-1887 calBCE (3640±50 BP, GrA-6477)
bp	3640±50
c14_lab_code	GrA-6477
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	150.56300354003906
sequence_source	bam
reference	Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link	http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps	-
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '15924G', 'position': 15924, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-TT'], 'diseases': ['LIMM']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}]