I4070

FASTA

Metadata

Reference

Data

identifier I4070
alternative_identifiers ['skeleton 230 barrow I-M7']
country The Netherlands
continent Europe
region western Europe
culture Netherlands_BA
epoch Bronze Age
group BANl
comment -
latitude 52.73356246948242
longitude 5.096182823181152
sex M
site De Tuithoorn, Oostwoud, Noord-Holland
site_detail -
mt_hg U5a1b1a
ychr_hg R1b1a1a2a1a1
year_from -1880
year_to -1657
date_detail 1880-1657 calBCE (3440±40 BP, GrA-17225)
bp 3440±40
c14_lab_code GrA-17225
c14_sample_tag True
c14_layer_tag -
avg_coverage 138.93299865722656
sequence_source bam
reference Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps -
mitopathos [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]