I4229

FASTA

Metadata

Reference

Data

identifier	I4229
alternative_identifiers	['CDM3']
country	Portugal
continent	Europe
region	Iberia
culture	Bell Beaker
epoch	Copper Age
group	BBC
comment	-
latitude	39.09000015258789
longitude	-9.25
sex	M
site	Cova da Moura, Torres Vedras
site_detail	-
mt_hg	U5a2+16362
ychr_hg	I2a1a1
year_from	-2336
year_to	-2063
date_detail	2336-2063 calBCE [2288-2134 calBCE (3775±25 BP, PSUAMS-1750), 2295-2062 calBCE (3783±29 BP, OxA-33490), 2335-2134 calBCE (3790±30 BP, OxA-33491)]
bp	3775±25
c14_lab_code	PSUAMS-1750
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	346.1629943847656
sequence_source	bam
reference	Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link	http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps	-
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}]