I4250

FASTA

Metadata

Reference

Data

identifier	I4250
alternative_identifiers	['RISE918', 'grave 5']
country	Germany
continent	Europe
region	central Europe
culture	Bell Beaker
epoch	Copper Age
group	BBC
comment	-
latitude	48.840999603271484
longitude	12.75
sex	F
site	Irlbach, County of Straubing-Bogen, Bavaria
site_detail	-
mt_hg	U5a1a2b
ychr_hg	-
year_from	-2433
year_to	-2149
date_detail	2433-2149 calBCE (3825±26 BP, BRAMS-1219)
bp	3825±26
c14_lab_code	BRAMS-1219
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	387.9119873046875
sequence_source	bam
reference	Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link	http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps	-
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '9804A', 'position': 9804, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CO3'], 'diseases': ['LHON / MS']}]