I4305
FASTA
Metadata
Reference
Data
| identifier | I4305 |
|---|---|
| alternative_identifiers | ['ST2215'] |
| country | France |
| continent | Europe |
| region | southern Europe |
| culture | France_MLN |
| epoch | Neolithic |
| group | MLN |
| comment | - |
| latitude | 43.457000732421875 |
| longitude | 5.86299991607666 |
| sex | F |
| site | Clos de Roque, Saint Maximin-la-Sainte-Baume |
| site_detail | - |
| mt_hg | T2b3+151 |
| ychr_hg | - |
| year_from | -4825 |
| year_to | -4616 |
| date_detail | 4825-4616 calBCE (5860±35 BP, PSUAMS-2225) |
| bp | 5860±35 |
| c14_lab_code | PSUAMS-2225 |
| c14_sample_tag | True |
| c14_layer_tag | - |
| avg_coverage | 277.1919860839844 |
| sequence_source | bam |
| reference | Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link) |
| data_link | http://www.ebi.ac.uk/ena/data/view/PRJEB23635 |
| ychr_snps | - |
| mitopathos | [{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}] |
I4305
