I4331

FASTA

Metadata

Reference

Data

identifier	I4331
alternative_identifiers	['VV1']
country	Croatia
continent	Europe
region	Balkans
culture	Croatia_EMBA
epoch	Bronze Age
group	BABA
comment	-
latitude	43.189998626708984
longitude	17.34000015258789
sex	M
site	Veliki Vanik
site_detail	-
mt_hg	I1a1
ychr_hg	J2b2a
year_from	-1631
year_to	-1521
date_detail	1631-1521 calBCE (3305±20 BP, PSUAMS-2257)
bp	3305±20
c14_lab_code	PSUAMS-2257
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['J:CTS687:6953311A->T', 'J:CTS852:7048870G->A', 'J:CTS4204:15476324G->A', 'J:CTS5280:16180103A->G', 'J:CTS5628:16401405C->G', 'J:CTS5678:16427564A->T', 'J:CTS7229:17367321C->A', 'J:CTS9877:19117262A->G', 'J:CTS10446:19460042G->C', 'J:CTS11571:23163701C->A', 'J:CTS11750:23250894C->T', 'J:CTS11765:23255729A->T', 'J:F1167:8393499G->A', 'J:F1181:8418927G->C', 'J:F1826:14705645G->A', 'J:F2114:16262942G->A', 'J:F2502:17495914G->A', 'J:F2839:18773505C->T', 'J:F3119:21097847C->T', 'J:F3176:21329083T->C', 'J:F4300:21144433T->A', 'J:FGC1599:21923739A->T', 'J:PF4513:7759610C->T', 'J:PF4519:8669451C->G', 'J:PF4524:10009851G->Ahet', 'J:PF4530:13597365C->T', 'J:PF4595:21858778C->A', 'J:S22619:21144432C->A', 'J:YSC0000228:22172960G->T', 'J:CTS4349:15602183G->A', 'J:CTS12047:23443976A->G', 'J:F1744:14264859G->A', 'J:F2973:19194316C->T', 'J:F4299:21144431T->A', 'J:FGC1604:10038100G->A', 'J:FGC3271:10038717G->A', 'J:PF4521:9815201T->C', 'J:PF4567:17605948A->C', 'J:PF4591:21281892C->A', 'J:PF4598:22118776A->G', 'J:PF4619:23251880A->C', 'J2b2a:L283:6932663C->G', 'J2b:L282:5359116C->T', 'J2b:M314:22753079A->C', 'J:CTS7832:17693210A->G', 'J:CTS11291:23058442G->T', 'J:F1633:9872486C->T', 'J:F1634:9872488T->C', 'J:F3138:21148350G->A']
mitopathos	[{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '15043A', 'position': 15043, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['MDD-associated']}, {'allele': '15924G', 'position': 15924, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-TT'], 'diseases': ['LIMM']}, {'allele': '16129A', 'position': 16129, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome with Migraine']}]