I4332

FASTA

Metadata

Reference

Data

identifier I4332
alternative_identifiers ['VV3']
country Croatia
continent Europe
region Balkans
culture Croatia_EMBA
epoch Bronze Age
group BABA
comment -
latitude 43.189998626708984
longitude 17.34000015258789
sex F
site Veliki Vanik
site_detail -
mt_hg W3a1
ychr_hg -
year_from -1618
year_to -1513
date_detail 1618-1513 calBCE (3290±20 BP, PSUAMS-2258)
bp 3290±20
c14_lab_code PSUAMS-2258
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps -
mitopathos [{'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '15784C', 'position': 15784, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['POAG - potential for association']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '5460A', 'position': 5460, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND2'], 'diseases': ['AD / PD / LHON']}]