I4440

FASTA

Metadata

Reference

Data

identifier	I4440
alternative_identifiers	['ZVEJ21']
country	Latvia
continent	Europe
region	Baltic
culture	Hunter-Gatherer
epoch	Mesolithic
group	HGE
comment	-
latitude	56.279998779296875
longitude	25.1299991607666
sex	M
site	Zvejnieki
site_detail	-
mt_hg	U4a1
ychr_hg	I2a1
year_from	-5220
year_to	-5039
date_detail	5220-5039 calBCE (6180±30 BP, PSUAMS-2264)
bp	6180±30
c14_lab_code	PSUAMS-2264
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['I:CTS1800:14073053G->A', 'I:CTS2536:14352669G->A', 'I:CTS4088:15389836T->C', 'I:CTS4209:15479899T->A', 'I:CTS4273:15536870C->T', 'I:CTS6265:16780748C->G', 'I:CTS7469:17497181C->A', 'I:CTS7502:17511797A->G', 'I:CTS7831:17692855T->A', 'I:CTS8420:18018313C->A', 'I:CTS8963:18582617C->T', 'I:CTS10941:22845794A->G', 'I:CTS11540:23156725C->T', 'I:FGC2412:21689728A->G', 'I:FGC2413:8262092C->T', 'I:FGC2415:13835003T->C', 'I:FI2:8382265C->G', 'I:L578:8267857G->A', 'I:L758:8536868C->G', 'I:L1197:14974451C->T', 'I:PF3627.2:6662712C->T', 'I:PF3640:7681156T->A', 'I:PF3641:7688470T->C', 'I:PF3660:8466652G->A', 'I:PF3661:8484606C->A', 'I:PF3665:8643763A->G', 'I:PF3794:21067903C->T', 'I:FI4:8873160G->T', 'I:CTS88:2723755G->A', 'I:CTS5946:16567253A->G', 'I:CTS9860:19104986G->A', 'I:FGC2416:7642823G->T', 'I:L772:15615533C->A', 'I2a1:P37.2:14491684T->C', 'I:CTS4848:15862842C->T', 'I:FI3:8485677C->A', 'I:PF3742:16354708G->A', 'I:CTS5650:16415916A->G', 'I:CTS9269:18789763C->T', 'I:PF3803:21452125A->G', 'I:CTS9618:18992894T->C', 'I:CTS2387:14286853T->Chet']
mitopathos	-