I4607

FASTA

Metadata

Reference

Data

identifier	I4607
alternative_identifiers	['SCCL_46/1']
country	Romania
continent	Europe
region	Balkans
culture	Hunter-Gatherer
epoch	Mesolithic
group	HGS
comment	-
latitude	44.630001068115234
longitude	22.610000610351562
sex	M
site	Schela Cladovei
site_detail	-
mt_hg	U5a2
ychr_hg	I2
year_from	-7340
year_to	-6640
date_detail	7340-6640 calBCE (8047±122 BP, OxA-4380)
bp	8047±122
c14_lab_code	OxA-4380
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['I:CTS1800:14073053G->A', 'I:CTS2193:14214481G->T', 'I:PF3661:8484606C->A', 'I2:PF3664:8567995G->A', 'I:CTS5946:16567253A->G', 'I:PF3837:22573702G->A', 'I:CTS9618:18992894T->C']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '8481T', 'position': 8481, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP8'], 'diseases': ['Tetralogy of Fallot patient']}]