I4878

FASTA

Metadata

Reference

Data

identifier	I4878
alternative_identifiers	['VLSC_U21']
country	Serbia
continent	Europe
region	Balkans
culture	Hunter-Gatherer
epoch	Mesolithic
group	HGS
comment	-
latitude	44.529998779296875
longitude	22.049999237060547
sex	M
site	Vlasac
site_detail	-
mt_hg	U4a
ychr_hg	I2a2a
year_from	-5995
year_to	-5710
date_detail	5995-5710 calBCE (6955±76 BP, PSUAMS-2383, corrected for Freshwater Reservoir Effect)
bp	6955±76
c14_lab_code	PSUAMS-2383,
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['I:CTS674:6943522C->T', 'I:CTS1800:14073053G->A', 'I:CTS2193:14214481G->T', 'I:CTS2514:14337364T->C', 'I:CTS4088:15389836T->C', 'I:CTS4209:15479899T->A', 'I:CTS4273:15536870C->T', 'I:CTS5764:16471254A->G', 'I:CTS6265:16780748C->G', 'I:CTS7469:17497181C->A', 'I:CTS7831:17692855T->A', 'I:CTS8420:18018313C->A', 'I:CTS8963:18582617C->T', 'I:CTS10058:19233673A->G', 'I:CTS10941:22845794A->G', 'I:FGC2412:21689728A->G', 'I:FGC2413:8262092C->T', 'I:FGC2415:13835003T->C', 'I:FI2:8382265C->G', 'I:L503:21359407C->G', 'I:L578:8267857G->A', 'I:L758:8536868C->G', 'I:PF3627.2:6662712C->T', 'I:PF3640:7681156T->A', 'I:PF3641:7688470T->C', 'I:PF3660:8466652G->A', 'I:PF3661:8484606C->A', 'I:PF3665:8643763A->G', 'I:PF3794:21067903C->T', 'I:YSC0000272:22115103G->A', 'I:CTS6231:16751000C->T', 'I:FI4:8873160G->T', 'I2:PF3664:8567995G->A', 'I:CTS88:2723755G->A', 'I:CTS8742:18172947A->G', 'I:CTS8876:18257568G->A', 'I:CTS9860:19104986G->A', 'I:FGC2416:7642823G->T', 'I:L847:23154034C->T', 'I:PF3797:21130059A->G', 'I:PF3814:21839183A->G', 'I:PF3817:21939618G->A', 'I:PF3829:22458740A->G', 'I:Z16985:13804066G->C', 'I:Z16987:22243817A->G', 'I2:L68:18700150C->T', 'I:CTS646:6926038T->A', 'I:CTS4848:15862842C->T', 'I:CTS7540:17525137A->G', 'I:CTS7593:17548890G->A', 'I:FI3:8485677C->A', 'I:CTS5650:16415916A->G', 'I:CTS7329:17424807C->T', 'I:L755:8465165C->T', 'I2a2:P217:7628484C->T', 'I2a2:L35:22725379C->A', 'I2a2:L368:6931594C->T', 'I:PF3803:21452125A->G', 'I2a2a:P221:8353707C->A', 'I2a2:L37:17516123T->C', 'I2a2:L181:19077754G->T', 'I:PF3642:7712917A->T', 'I:FGC2417:10051801G->A', 'I:PF3819:22100087T->C', 'I2a2a:L622:13718315C->Ahet', 'I:PF3685:13544835A->T']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '15693C', 'position': 15693, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['Possibly LVNC cardiomyopathy-associated']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '499A', 'position': 499, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Endometriosis']}]