I4880

FASTA

Metadata

Reference

Data

identifier	I4880
alternative_identifiers	['VLSC_U62']
country	Serbia
continent	Europe
region	Balkans
culture	Hunter-Gatherer
epoch	Mesolithic
group	HGS
comment	-
latitude	44.529998779296875
longitude	22.049999237060547
sex	M
site	Vlasac
site_detail	-
mt_hg	U4b1b1
ychr_hg	I2a2a1b2
year_from	-6000
year_to	-5725
date_detail	6000-5725 calBCE (6979±75 BP, PSUAMS-2384, corrected for Freshwater Reservoir Effect)
bp	6979±75
c14_lab_code	PSUAMS-2384,
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['I:CTS2387:14286853T->C', 'I:CTS2514:14337364T->C', 'I:CTS3384:14884659A->C', 'I:CTS4088:15389836T->C', 'I:CTS4209:15479899T->A', 'I:CTS4273:15536870C->T', 'I:CTS5764:16471254A->G', 'I:CTS6265:16780748C->G', 'I:CTS7469:17497181C->A', 'I:CTS7502:17511797A->G', 'I:CTS7831:17692855T->A', 'I:CTS8420:18018313C->A', 'I:CTS8963:18582617C->T', 'I:CTS10058:19233673A->G', 'I:CTS10941:22845794A->G', 'I:CTS11540:23156725C->T', 'I:FGC2412:21689728A->G', 'I:FGC2413:8262092C->T', 'I:FGC2415:13835003T->C', 'I:FI2:8382265C->G', 'I:L503:21359407C->G', 'I:L578:8267857G->A', 'I:L758:8536868C->G', 'I:L846:7856500C->T', 'I:L1197:14974451C->T', 'I:PF3627.2:6662712C->T', 'I:PF3640:7681156T->A', 'I:PF3641:7688470T->C', 'I:PF3660:8466652G->A', 'I:PF3661:8484606C->A', 'I:PF3665:8643763A->G', 'I:PF3794:21067903C->T', 'I:PF3796:21119888G->T', 'I:Z16987:22243817A->Ghet', 'I:CTS6231:16751000C->T', 'I2:PF3664:8567995G->A', 'I:CTS88:2723755G->A', 'I:CTS3517:14986989T->G', 'I:CTS5946:16567253A->G', 'I:CTS8876:18257568G->A', 'I:CTS9860:19104986G->A', 'I:L772:15615533C->A', 'I:P38:14484379A->C', 'I:P212:3545070T->A', 'I:PF3800:21402723A->G', 'I:PF3814:21839183A->G', 'I:PF3817:21939618G->A', 'I:PF3836:22525421T->G', 'I:Z16985:13804066G->C', 'I2:L68:18700150C->T', 'I:CTS646:6926038T->A', 'I:CTS4982:15937959C->T', 'I:CTS7540:17525137A->G', 'I:FI3:8485677C->A', 'I:PF3742:16354708G->A', 'I:CTS5650:16415916A->G', 'I:PF3837:22573702G->A', 'I:CTS3383:14884646C->T', 'I:L755:8465165C->T', 'I2a2a1:CTS9183:18732197A->G', 'I2a2a:L59:7113556C->T', 'I2a2:P217:7628484C->T', 'I:CTS9269:18789763C->T', 'I:PF3666:8728974T->G', 'I2a2:L35:22725379C->A', 'I2a2:L368:6931594C->T', 'I2a2a:P223:16699334C->G', 'I2a2a:P220:24475669G->T', 'I2a2a:P221:8353707C->A', 'I2a2:L37:17516123T->C', 'I2a2:L181:19077754G->T', 'I2a2:P218:17493630T->G', 'I:PF3645:7853028C->A', 'I:CTS9618:18992894T->C', 'I2a2a1b:CTS10057:19232160C->T', 'I2a2:P216:13992338C->G', 'I:CTS9264:18786174G->A', 'I2a2a1b2:Z161:2696497C->G', 'I2a2a:M223:21717307G->A', 'I2a2a1:CTS616:6906332G->C']
mitopathos	-