I4882

FASTA

Metadata

Reference

Data

identifier	I4882
alternative_identifiers	['VLSC_U69']
country	Serbia
continent	Europe
region	Balkans
culture	Hunter-Gatherer
epoch	Mesolithic
group	HGS
comment	brother_of_I4880
latitude	44.529998779296875
longitude	22.049999237060547
sex	M
site	Vlasac
site_detail	-
mt_hg	U4b1b1
ychr_hg	I2a2a1b
year_from	-6200
year_to	-5900
date_detail	6200-5900 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['I2:M438:16638804A->G', 'I:CTS1800:14073053G->A', 'I:CTS2193:14214481G->T', 'I:CTS2514:14337364T->C', 'I:CTS4209:15479899T->A', 'I:CTS4273:15536870C->T', 'I:CTS6265:16780748C->G', 'I:CTS6751:17090238C->G', 'I:CTS7831:17692855T->A', 'I:CTS8963:18582617C->T', 'I:CTS11540:23156725C->T', 'I:FGC2412:21689728A->G', 'I:FGC2413:8262092C->T', 'I:FGC2415:13835003T->C', 'I:FI2:8382265C->G', 'I:L503:21359407C->G', 'I:L578:8267857G->A', 'I:L758:8536868C->G', 'I:L1197:14974451C->T', 'I:PF3627.2:6662712C->T', 'I:PF3640:7681156T->A', 'I:PF3641:7688470T->C', 'I:PF3660:8466652G->A', 'I:PF3794:21067903C->T', 'I:PF3796:21119888G->T', 'I:Z16987:22243817A->Ghet', 'I:CTS6231:16751000C->T', 'I:FI4:8873160G->T', 'I2:PF3664:8567995G->A', 'I:CTS5946:16567253A->G', 'I:CTS8876:18257568G->A', 'I:CTS9860:19104986G->A', 'I:CTS11979:23401471C->T', 'I:FGC7049:22459264G->A', 'I:L41:19048602G->A', 'I:L772:15615533C->A', 'I:M1460:21862684A->C', 'I:PF3797:21130059A->G', 'I:PF3814:21839183A->G', 'I:Z16985:13804066G->C', 'I2a:L460:7879415A->C', 'I:CTS646:6926038T->A', 'I:CTS4848:15862842C->T', 'I:CTS7540:17525137A->G', 'I:CTS8333:17940414G->A', 'I:FI3:8485677C->A', 'I:L844.1:2884029T->C', 'I:CTS5650:16415916A->G', 'I:CTS8345:17949402C->G', 'I:PF3828:22458430C->T', 'I:PF3837:22573702G->A', 'I:L755:8465165C->T', 'I2a2a:P222:18888200C->G', 'I2a2:P217:7628484C->T', 'I:CTS9269:18789763C->T', 'I:PF3666:8728974T->G', 'I2a2:L35:22725379C->A', 'I2a2:L368:6931594C->T', 'I:L751:18394743A->G', 'I2a2a1b:CTS10100:19255890G->A', 'I2a2a:P221:8353707C->A', 'I2a2:L37:17516123T->C', 'I2a2:L181:19077754G->T', 'I2a2:P218:17493630T->G', 'I:CTS9264:18786174G->A', 'I2a2a1:CTS616:6906332G->C', 'I:CTS8300:17924382T->A', 'I:PF3829:22458740A->Ghet']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '13528G', 'position': 13528, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['LHON-like / LHON / MELAS']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '15693C', 'position': 15693, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['Possibly LVNC cardiomyopathy-associated']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '499A', 'position': 499, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Endometriosis']}]