identifier I4884
alternative_identifiers ['feature 515']
country Czech Republic
continent Europe
region central Europe
culture Czech_EBA
epoch Bronze Age
group EBACz
comment -
latitude 50.12174606323242
longitude 14.456951141357422
sex M
site Prague 8, Kobylisy, Ke Stírce Street
site_detail -
mt_hg H4a1a1a
ychr_hg I2c1
year_from -1882
year_to -1745
date_detail 1882-1745 calBCE (3480±20 BP, PSUAMS-2842)
bp 3480±20
c14_lab_code PSUAMS-2842
c14_sample_tag True
c14_layer_tag -
avg_coverage 101.1240005493164
sequence_source bam
reference Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps -
mitopathos [{'allele': '10044G', 'position': 10044, 'status': 'Unclear', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-TG'], 'diseases': ['SIDS']}, {'allele': '14582G', 'position': 14582, 'status': 'Reported: individually neutral variants causing LHON in combination', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND6'], 'diseases': ['LHON synergistic combo 14258A + 14582G']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}]