I4886

FASTA

Metadata

Reference

Data

identifier I4886
alternative_identifiers ['feature 541']
country Czech Republic
continent Europe
region central Europe
culture Bell Beaker
epoch Copper Age
group BBC
comment -
latitude 50.12174606323242
longitude 14.456951141357422
sex M
site Prague 8, Kobylisy, Ke Stírce Street
site_detail -
mt_hg H6a
ychr_hg R1b1a1a2a1a2b1
year_from -2205
year_to -2042
date_detail 2205-2042 calBCE (3740±20 BP, PSUAMS-2844)
bp 3740±20
c14_lab_code PSUAMS-2844
c14_sample_tag True
c14_layer_tag -
avg_coverage 219.406005859375
sequence_source bam
reference Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps -
mitopathos [{'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}]