I4894

FASTA

Metadata

Reference

Data

identifier	I4894
alternative_identifiers	['feature 552', 'Grave 18']
country	Czech Republic
continent	Europe
region	central Europe
culture	Czech_MN
epoch	Neolithic
group	NECz
comment	-
latitude	50.12174606323242
longitude	14.456951141357422
sex	F
site	Prague 8, Kobylisy, Ke Stírce Street
site_detail	-
mt_hg	U8b1b1
ychr_hg	-
year_from	-4488
year_to	-4368
date_detail	4488-4368 calBCE (5610±20 BP, PSUAMS-2851)
bp	5610±20
c14_lab_code	PSUAMS-2851
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	202.72799682617188
sequence_source	bam
reference	Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link	http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps	-
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16183C', 'position': 16183, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16189C', 'position': 16189, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Diabetes / Cardiomyopathy /cancer risk / mtDNA copy nbr / Metabolic Syndrome / Melanoma patients']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]