I4915

FASTA

Metadata

Reference

Data

identifier	I4915
alternative_identifiers	['HJDK_21']
country	Serbia
continent	Europe
region	Balkans
culture	Hunter-Gatherer
epoch	Mesolithic
group	HGS
comment	-
latitude	44.63999938964844
longitude	22.299999237060547
sex	M
site	Hadučka Vodenica
site_detail	-
mt_hg	U5b2b
ychr_hg	I2a2
year_from	-6340
year_to	-5990
date_detail	6340-5990 calBCE (7260±76 BP, PSUAMS-2360, corrected for Freshwater Reservoir Effect)
bp	7260±76
c14_lab_code	PSUAMS-2360,
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['I:CTS1800:14073053G->A', 'I:CTS2193:14214481G->T', 'I:CTS2514:14337364T->C', 'I:CTS4209:15479899T->A', 'I:CTS4273:15536870C->T', 'I:CTS6265:16780748C->G', 'I:CTS7469:17497181C->A', 'I:CTS7502:17511797A->G', 'I:CTS7831:17692855T->A', 'I:CTS8420:18018313C->A', 'I:CTS10058:19233673A->G', 'I:CTS10941:22845794A->G', 'I:CTS11540:23156725C->T', 'I:FGC2413:8262092C->T', 'I:FGC2415:13835003T->C', 'I:FI2:8382265C->G', 'I:L503:21359407C->G', 'I:L578:8267857G->A', 'I:L758:8536868C->G', 'I:PF3627.2:6662712C->T', 'I:PF3640:7681156T->A', 'I:PF3661:8484606C->A', 'I:PF3796:21119888G->T', 'I:PF3833:22485425A->T', 'I:YSC0000272:22115103G->A', 'I:Z16987:22243817A->Ghet', 'I:CTS6231:16751000C->T', 'I:FI4:8873160G->T', 'I2:PF3664:8567995G->A', 'I:CTS88:2723755G->A', 'I:CTS3076:14646409C->T', 'I:CTS4340:15595624G->A', 'I:CTS5946:16567253A->G', 'I:CTS8742:18172947A->G', 'I:CTS8876:18257568G->A', 'I:CTS9860:19104986G->A', 'I:FGC2416:7642823G->T', 'I:FGC7049:22459264G->A', 'I:L41:19048602G->A', 'I:L847:23154034C->T', 'I:PF3806:21525069G->A', 'I:PF3814:21839183A->G', 'I:PF3815:21841289G->T', 'I:PF3817:21939618G->A', 'I:PF3836:22525421T->G', 'I2:L68:18700150C->T', 'I:CTS646:6926038T->A', 'I:CTS4848:15862842C->T', 'I:CTS7540:17525137A->G', 'I:FI3:8485677C->A', 'I:CTS5650:16415916A->G', 'I:PF3828:22458430C->T', 'I:CTS7329:17424807C->T', 'I:CTS8545:18078759T->A', 'I2a2:P217:7628484C->T', 'I:CTS4077:15377802G->A', 'I:CTS9269:18789763C->T', 'I2a2:L35:22725379C->A', 'I2a2:L368:6931594C->T', 'I:PF3803:21452125A->G', 'I2a2:L37:17516123T->C', 'I2a2:L181:19077754G->T', 'I2a2:P218:17493630T->G', 'I:CTS8064:17818847G->A', 'I:PF3804:21465033C->A', 'I:CTS9618:18992894T->C', 'I2a2:P216:13992338C->G', 'I:PF3829:22458740A->Ghet', 'I:FGC2412:21689728A->Ghet']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12634G', 'position': 12634, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND5'], 'diseases': ['Thyroid Cancer Cell Line']}, {'allele': '13637G', 'position': 13637, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Possible LHON factor']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '8481T', 'position': 8481, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP8'], 'diseases': ['Tetralogy of Fallot patient']}]