I4936

FASTA

Metadata

Reference

Data

identifier I4936
alternative_identifiers ['P2-10-US11']
country Italy
continent Europe
region southern Europe
culture Bell Beaker
epoch Copper Age
group BBC
comment -
latitude 37.73497009277344
longitude 12.961899757385254
sex F
site Pergole 2, Partanna, Sicily
site_detail -
mt_hg K1a
ychr_hg -
year_from -2500
year_to -1900
date_detail 2500-1900 BCE
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag -
avg_coverage 2.9662599563598633
sequence_source bam
reference Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps -
mitopathos [{'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]