I4945

FASTA

Metadata

Reference

Data

identifier I4945
alternative_identifiers ['feature 547']
country Czech Republic
continent Europe
region central Europe
culture Bell Beaker
epoch Copper Age
group BBC
comment -
latitude 50.12174606323242
longitude 14.456951141357422
sex F
site Prague 8, Kobylisy, Ke Stírce Street
site_detail -
mt_hg H4a1c
ychr_hg -
year_from -2291
year_to -2144
date_detail 2291-2144 calBCE (3795±20 BP, PSUAMS-2854)
bp 3795±20
c14_lab_code PSUAMS-2854
c14_sample_tag True
c14_layer_tag -
avg_coverage 273.47601318359375
sequence_source bam
reference Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps -
mitopathos [{'allele': '14582G', 'position': 14582, 'status': 'Reported: individually neutral variants causing LHON in combination', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND6'], 'diseases': ['LHON synergistic combo 14258A + 14582G']}]