I5035
FASTA
Metadata
Reference
Data
| identifier | I5035 |
|---|---|
| alternative_identifiers | ['RISE577', 'F0565', 'gr. 238'] |
| country | Czech Republic |
| continent | Europe |
| region | central Europe |
| culture | Czech_EBA |
| epoch | Bronze Age |
| group | EBACz |
| comment | - |
| latitude | 50.16666793823242 |
| longitude | 14.316666603088379 |
| sex | F |
| site | Velké Přílepy |
| site_detail | - |
| mt_hg | T2b |
| ychr_hg | - |
| year_from | -2300 |
| year_to | -1900 |
| date_detail | 2300-1900 BCE |
| bp | - |
| c14_lab_code | - |
| c14_sample_tag | - |
| c14_layer_tag | - |
| avg_coverage | 283.4289855957031 |
| sequence_source | bam |
| reference | Allentoft et al. 2015. Population genomics of Bronze Age Eurasia. Nature, 522(7555), 167-172. (link) |
| data_link | https://www.ebi.ac.uk/ena/data/view/PRJEB9021 |
| ychr_snps | - |
| mitopathos | [{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}] |
I5035
