I5070

FASTA

Metadata

Reference

Data

identifier	I5070
alternative_identifiers	['Ind. 58']
country	Austria
continent	Europe
region	central Europe
culture	Linear Pottery
epoch	Neolithic
group	LBK
comment	-
latitude	48.58000183105469
longitude	16.469999313354492
sex	M
site	Schletz
site_detail	-
mt_hg	K1a1a
ychr_hg	C1a2
year_from	-5500
year_to	-4775
date_detail	5500-4775 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['C1a2:Y11342:7688365C->T', 'C1a2:Z28835:13200044G->T', 'C1:CTS6773:17100606C->T', 'C:CTS2955:14587658T->C', 'C:CTS6266:16780809G->A', 'C:CTS7301:17412198T->C', 'C:CTS10720:22726491C->T', 'C:CTS11598:23185632A->G', 'C:F847:6879365C->T', 'C:F1804:14603298C->T', 'C:F2678:18030738C->T', 'C:F3043:19411754G->A', 'C:F3395:23031841G->A', 'C:Z3958:7869808C->T', 'C:Z3974:8585701A->G', 'C:Z3986:9076205C->T', 'C:Z4099:22168468A->G', 'C:Z4139:23388830T->A', 'C1a2:Y10458:14400573C->A', 'C1a2:Y11594:21183344G->A', 'C1a2:Z28838:13670713A->T', 'C1a:CTS11043:22914979G->T', 'C1:F3393:23023974C->A', 'C:CTS3223:14755880C->T', 'C:CTS4676:15762839A->G', 'C:CTS9679:19022181A->C', 'C:CTS11544:23158264C->G', 'C:F1044:7671399A->G', 'C:F1288:8537273G->A', 'C:F1367:8640245C->G', 'C:F1727:14206892C->T', 'C:F2253:16757900C->T', 'C:F2449:17341195G->T', 'C:F2606:17820514C->T', 'C:F2869:18843140C->T', 'C:F2888:18890063C->T', 'C:F2969:19182853C->G', 'C:F3319:22575539A->G', 'C:F3462:23553006C->T', 'C:F3537:23769373A->G', 'C:F3712:17957903T->C', 'C:F3719:22937380C->A', 'C:Y2798:13865051G->T', 'C:Y2799:21875538T->C', 'C:Y6691:15896404A->G', 'C:Z3977:8673832C->T', 'C:Z4004:13228027G->T', 'C:Z4014:13656195T->A', 'C:Z4073:21566042C->T', 'C:Z4082:21797986T->A', 'C:Z4083:21809035G->A', 'C:Z4093:21994261G->A', 'C:Z7177:8668533C->T', 'C1a2:V2185:8531334T->A', 'C1a2:V2618:14820317A->G', 'C1a2:V3163:15831202C->T', 'C1a2:Y10477:21310679T->C', 'C1a2:Y11346:7952824C->T', 'C1a2:Y11370:13831985T->A', 'C1a2:Y11402:16407947G->A', 'C1a2:Y11474:21771914C->T', 'C:CTS2377:14281450G->A', 'C:CTS3151:14685840C->T', 'C:CTS5813:16490115G->A', 'C:CTS7930:17748163T->C', 'C:CTS10083:19246276T->A', 'C:CTS12472:28588986G->T', 'C:F1217:8454895T->C', 'C:F2803:18663706C->G', 'C:Y4496:8127435A->G', 'C1a2:V1876:8395859A->C', 'C1a2:Y11405:16567209G->C', 'C1a2:Z28837:13667791G->A', 'C:CTS10442:19457443A->G', 'C:F1871:14954047C->T', 'C:F2774:18572332T->C', 'C:F3388:23020085A->T', 'C:CTS4032:15344716A->C', 'C:CTS10271:19361507G->A', 'C:Z4059:21291275G->A', 'C:CTS5383:16242575G->A', 'C:F2446:17328425C->T', 'C:Y6693:8143636G->A', 'C:Z4081:21792125G->A', 'C1a2:M1009:17048894A->T', 'C1a2:V2268:8564465T->C', 'C1a2:Y10464:16416958G->A', 'C1a2:Y11369:9903503G->A', 'C1a2:Y11390:15679297A->C', 'C1a2:Y11436:17765047T->A', 'C1a2:Y11440:17970997C->T', 'C1a2:Y11456:19077475G->A', 'C1a2:Y11467:21303462T->A', 'C1a2:Y11469:21366348T->C', 'C1a2:Y11472:21688302C->T', 'C1a2:Z28900:17445937T->C', 'C:CTS1384:7374464G->A', 'C:CTS8148:17851862C->T', 'C:F1307:8560645A->G']
mitopathos	-