I5077

FASTA

Metadata

Reference

Data

identifier	I5077
alternative_identifiers	['OHV-6.1']
country	Croatia
continent	Europe
region	Balkans
culture	Sopot
epoch	Neolithic
group	NEBA
comment	-
latitude	45.31999969482422
longitude	18.389999389648438
sex	M
site	Osijek
site_detail	Hermanov Vinograd
mt_hg	U5a1a2
ychr_hg	G2a2a1
year_from	-5207
year_to	-4945
date_detail	5207-4945 calBCE (6110±25 BP, PSUAMS-2691)
bp	6110±25
c14_lab_code	PSUAMS-2691
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['G2a:F3088:20813445G->A', 'G2a:F4086:7727677C->T', 'G2a:L31:14028148C->A', 'G2a:M3393:21493984G->T', 'G2a:M3397:21605685G->C', 'G2a:P15:23244026C->T', 'G2a:PF3141:23973594T->G', 'G2:CTS1900:14116322T->A', 'G2:CTS2406:14294068C->T', 'G2:CTS10089:19248446G->A', 'G2:F1239:8482393C->T', 'G2:F1294:8545324T->A', 'G2:F1393:8719593G->A', 'G2:F3070:19493301A->G', 'G2:F3198:21401188G->T', 'G2:F3344:22697266G->A', 'G2:F3536:23768744C->T', 'G2:L89:7978725C->T', 'G2:M3579:21147058A->G', 'G:CTS34:2681740G->A', 'G:CTS1013:7145960C->T', 'G:CTS1283:7309873T->G', 'G:CTS2251:14235140C->T', 'G:CTS2271:14243137C->T', 'G:CTS2357:14273557C->T', 'G:CTS4238:15504804C->T', 'G:CTS4761:15802681C->T', 'G:CTS4887:15888550C->T', 'G:CTS6957:17210745C->T', 'G:CTS7092:17281783G->A', 'G:CTS7674:17610571G->A', 'G:CTS8023:17798903T->C', 'G:CTS8531:18070349G->C', 'G:CTS9011:18615020A->T', 'G:CTS9593:18979775T->A', 'G:CTS10026:19215139A->T', 'G:CTS10723:22730922C->G', 'G:CTS10945:22848965A->G', 'G:CTS11228:23023554C->A', 'G:CTS11529:23151673T->C', 'G:CTS11911:23346582A->C', 'G:CTS13035:28783924C->A', 'G:F1131:8240725C->T', 'G:F1383:8700380C->T', 'G:F1551:9448354A->G', 'G:F2076:16185081A->G', 'G:L116:14989721C->G', 'G:L382:14469411C->A', 'G:L522:17533325A->C', 'G:L770:2863466A->T', 'G:L837:17853245A->G', 'G:M3432:23578115C->G', 'G:M3450:6931141C->G', 'G:M3468:7744050T->C', 'G:M3472:7899682T->C', 'G:M3473:7927218C->T', 'G:M3474:7930724C->A', 'G:M3479:8231862G->C', 'G:M3480:8327892T->A', 'G:M3482:8454233G->A', 'G:M3485:8563874C->T', 'G:M3486:8600158A->T', 'G:M3597:21865624G->A', 'G:M3599:21939157G->A', 'G:M3628:23793740C->A', 'G:PF2952:14577177G->A', 'G:PF3134:15275200C->G', 'G:Z3262:13676268G->A', 'G2:CTS4264:15528792T->C', 'G2:CTS4413:15635425T->C', 'G2:CTS4703:15776024C->T', 'G2:CTS6316:16817402C->T', 'G2:CTS6742:17088129G->C', 'G2:CTS9885:19119067C->T', 'G2:F1189:8427005A->G', 'G2:F1647:9907842G->T', 'G2:F2319:16903051A->T', 'G2:F3226:21663882C->A', 'G2:M3465:7571775G->T', 'G2:M3469:7823146G->T', 'G2:M3488:8687693T->A', 'G2:M3493:9443697G->A', 'G2:PF2909:13205148A->G', 'G2:PF3119:23739606G->T', 'G2:Y380:28799209T->Chet', 'G:CTS373:6716150T->C', 'G:CTS1612:13987230A->G', 'G:CTS2120:14188094G->T', 'G:CTS2125:14190447A->G', 'G:CTS2517:14338503C->T', 'G:CTS4101:15397649A->G', 'G:CTS4523:15693336G->A', 'G:CTS4749:15797043A->G', 'G:CTS5317:16203361G->C', 'G:CTS5640:16408569G->A', 'G:CTS6483:16929270C->T', 'G:CTS9710:19033112G->A', 'G:CTS9894:19124322A->T', 'G:CTS10721:22729194C->T', 'G:CTS11294:23059496G->A', 'G:L154:8614138T->G', 'G:M3264:8318375G->T', 'G:M3266:8422993T->A', 'G:M3464:7537950C->T', 'G:M3466:7614386G->A', 'G:M3470:7830068T->C', 'G:M3471:7840218C->A', 'G:M3481:8387539G->A', 'G:M3582:21334507G->T', 'G:Page94:2846401C->T', 'G2a:CTS6026:16620480C->T', 'G2a:CTS6753:17090976C->T', 'G2a:F1980:15660640C->T', 'G2:CTS5666:16424034C->T', 'G:CTS1010:7143549C->T', 'G:CTS4479:15667235G->A', 'G:CTS5757:16469840A->G', 'G:CTS9707:19030998C->A', 'G:CTS11400:23095144A->G', 'G:CTS12654:28658660G->T', 'G:M3477:8121059G->A', 'G:M3595:21671839C->T', 'G2a2a1:PF3170:18090604G->A', 'G2a2a:PF3147:7738069G->A', 'G2a2a:PF3159:14815695C->G', 'G2a2a:PF3181:21808944C->A', 'G2a2a:PF3184:22576860C->T', 'G2a2a:PF3185:22894488C->T', 'G2:PF3125:24485469C->T', 'G:CTS827:7038432C->G', 'G2a2a1:PF3155:14006343T->C', 'G2a2a1:PF3160:14926732C->T', 'G2a2a1:S11769:8648696C->T', 'G2a2a:PF3149:7943188A->G', 'G2a2a:Z6178:7245721G->A', 'G2a:F1975:15588776A->C', 'G:S8863:4179056G->A', 'G2a2a1:S15710:14254785T->G', 'G2a2a:PF3150:8476569T->C', 'G2a2a:PF3151:9785736A->G', 'G:CTS692:6955839A->Ghet', 'G:M3248:7565637G->A', 'G:M3490:8742700A->G', 'G2a2a:PF3166:16735582T->G', 'G:U23:14423856G->A', 'G:CTS189:2795691G->A', 'G:PF3123:24357567A->G', 'G2a2a:FGC2273:23552204A->G', 'G:CTS1437:7397510C->G']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]