I5078

FASTA

Metadata

Reference

Data

identifier	I5078
alternative_identifiers	['OHV-7.1']
country	Croatia
continent	Europe
region	Balkans
culture	Sopot
epoch	Neolithic
group	NEBA
comment	-
latitude	45.31999969482422
longitude	18.389999389648438
sex	M
site	Osijek
site_detail	Hermanov Vinograd
mt_hg	H10
ychr_hg	J2a1
year_from	-4692
year_to	-4546
date_detail	4692-4546 calBCE (5770±25 BP, PSUAMS-2615)
bp	5770±25
c14_lab_code	PSUAMS-2615
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['J2a:L152:22243566C->T', 'J2a:L212:22711465T->C', 'J2a:L559:21674327A->G', 'J:CTS687:6953311A->T', 'J:CTS1250:7296343G->T', 'J:CTS5280:16180103A->G', 'J:CTS5628:16401405C->G', 'J:CTS5678:16427564A->T', 'J:CTS7229:17367321C->A', 'J:CTS8078:17827486C->T', 'J:CTS9877:19117262A->G', 'J:CTS10446:19460042G->C', 'J:CTS11571:23163701C->A', 'J:CTS11765:23255729A->T', 'J:F1826:14705645G->A', 'J:F2114:16262942G->A', 'J:F2502:17495914G->A', 'J:F2746:18257026G->A', 'J:F2839:18773505C->T', 'J:F3119:21097847C->T', 'J:F3176:21329083T->C', 'J:F4300:21144433T->A', 'J:L60:14237131C->T', 'J:L778:23088142T->C', 'J:P209:19179335T->C', 'J:PF4505:7065239T->C', 'J:PF4513:7759610C->T', 'J:PF4519:8669451C->G', 'J:PF4524:10009851G->Ahet', 'J:PF4530:13597365C->T', 'J:PF4572:17996247A->G', 'J:PF4594:21495992C->A', 'J:PF4595:21858778C->A', 'J:PF4605:22506256G->T', 'J:S22619:21144432C->A', 'J:Z7829:22465433G->C', 'J:CTS8974:18588650A->G', 'J:CTS12047:23443976A->G', 'J:F1744:14264859G->A', 'J:F2769:18552360G->C', 'J:F2973:19194316C->T', 'J:F4299:21144431T->A', 'J:FGC1604:10038100G->A', 'J:FGC3271:10038717G->A', 'J:PF4521:9815201T->C', 'J:PF4567:17605948A->C', 'J:PF4591:21281892C->A', 'J:CTS7832:17693210A->G', 'J:CTS11291:23058442G->T', 'J:F1633:9872486C->T', 'J:F1634:9872488T->C', 'J2a1:F4326:23021978A->G', 'J:CTS5545.1:16352755C->T', 'J:CTS6958:17210893G->A', 'J:CTS8938:18567169T->G', 'J:CTS9533:18950820C->A', 'J:F1168:8393849G->A', 'J:F1632:9872484T->C', 'J:PF4515:8308114G->A', 'J:PF4596:21944571T->C', 'J:PF4602:22246347T->A', 'J:PF4603:22458439G->C']
mitopathos	[{'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}]