I5116

FASTA

Metadata

Reference

Data

identifier I5116
alternative_identifiers ['grave 1', 'HUNG847']
country Hungary
continent Europe
region Pannonia
culture Hungary_LCA
epoch Copper Age
group CAHu
comment -
latitude 47.80989074707031
longitude 20.889266967773438
sex F
site Mezőcsát-Hörcsögös
site_detail -
mt_hg W
ychr_hg -
year_from -3400
year_to -3000
date_detail 3400-3000 BCE
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag -
avg_coverage 9.192890167236328
sequence_source bam
reference Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps -
mitopathos [{'allele': '12705T', 'position': 12705, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CO1'], 'diseases': ['Possible protective factor for normal tension glaucoma']}, {'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '5460A', 'position': 5460, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND2'], 'diseases': ['AD / PD / LHON']}]