I5204

FASTA

Metadata

Reference

Data

identifier I5204
alternative_identifiers ['Ind. 14/2']
country Austria
continent Europe
region central Europe
culture Linear Pottery
epoch Neolithic
group LBK
comment -
latitude 48.58000183105469
longitude 16.469999313354492
sex M
site Schletz
site_detail -
mt_hg J1c2
ychr_hg G2a2b2a3
year_from -5500
year_to -4500
date_detail 5500-4500 BCE
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps ['G2a2b2a:CTS4454^:15655268C->T', 'G2a2b2a:CTS10366:19423576G->A', 'G2a2b2a:P303:21645348T->C', 'G2a2b2a:PF3329:8478026C->A', 'G2a2b2a:PF3342:21935606G->T', 'G2a2b2a:Z3243:21935550A->G', 'G2a2b2:CTS9957:19170699C->T', 'G2a2b:F2535:17589788C->T', 'G2a2b:F3139:21151007T->C', 'G2a2b:L32:14692227T->C', 'G2a2b:Z3260:13671506G->T', 'G2a2:CTS4367:15615340C->G', 'G2a:CTS6630:17022002C->T', 'G2a:F2529:17571517A->G', 'G2a:F3088:20813445G->A', 'G2a:F4086:7727677C->T', 'G2a:L31:14028148C->A', 'G2a:M3393:21493984G->T', 'G2a:M3397:21605685G->C', 'G2a:P15:23244026C->T', 'G2a:PF3141:23973594T->G', 'G2:CTS1900:14116322T->A', 'G2:CTS2406:14294068C->T', 'G2:CTS10089:19248446G->A', 'G2:F1239:8482393C->T', 'G2:F1294:8545324T->A', 'G2:F1393:8719593G->A', 'G2:F3070:19493301A->G', 'G2:F3198:21401188G->T', 'G2:F3220:21637589G->C', 'G2:F3344:22697266G->A', 'G2:F3536:23768744C->T', 'G2:L89:7978725C->T', 'G2:M3579:21147058A->G', 'G2:P287:22072097G->T', 'G:CTS34:2681740G->A', 'G:CTS692:6955839A->G', 'G:CTS1283:7309873T->G', 'G:CTS2271:14243137C->T', 'G:CTS2357:14273557C->T', 'G:CTS4238:15504804C->T', 'G:CTS4761:15802681C->T', 'G:CTS6957:17210745C->T', 'G:CTS7269:17393643T->C', 'G:CTS7674:17610571G->A', 'G:CTS8023:17798903T->C', 'G:CTS8531:18070349G->C', 'G:CTS9011:18615020A->T', 'G:CTS9593:18979775T->A', 'G:CTS10026:19215139A->T', 'G:CTS10945:22848965A->G', 'G:CTS11185:22997377C->G', 'G:CTS11228:23023554C->A', 'G:CTS11331:23074190A->G', 'G:CTS11529:23151673T->C', 'G:CTS11911:23346582A->C', 'G:CTS13035:28783924C->A', 'G:F1383:8700380C->T', 'G:F1551:9448354A->G', 'G:L116:14989721C->G', 'G:L382:14469411C->A', 'G:L522:17533325A->C', 'G:L770:2863466A->T', 'G:M3258:7992031T->C', 'G:M3450:6931141C->G', 'G:M3468:7744050T->C', 'G:M3473:7927218C->T', 'G:M3474:7930724C->A', 'G:M3479:8231862G->C', 'G:M3480:8327892T->A', 'G:M3482:8454233G->A', 'G:M3485:8563874C->T', 'G:M3486:8600158A->T', 'G:M3597:21865624G->A', 'G:M3599:21939157G->A', 'G:M3609:22651339C->T', 'G:M3628:23793740C->A', 'G:P257:14432928G->A', 'G:PF2918:13679469G->A', 'G:PF2952:14577177G->A', 'G:PF3134:15275200C->G', 'G:U21:15204710A->C', 'G:Z3262:13676268G->A', 'G2a2b2a:CTS424:6744902C->T', 'G2a2b2a:CTS946:7100848A->G', 'G2a2b2a:PF3332:10026953A->T', 'G2a2b:CTS10449:19461366C->A', 'G2a2b:M3412:22553146G->A', 'G2a:Z3240:10060449A->G', 'G2:CTS4264:15528792T->C', 'G2:CTS4413:15635425T->C', 'G2:CTS4703:15776024C->T', 'G2:CTS6316:16817402C->T', 'G2:CTS6742:17088129G->C', 'G2:F1189:8427005A->G', 'G2:F1647:9907842G->T', 'G2:F2319:16903051A->T', 'G2:M3465:7571775G->T', 'G2:M3469:7823146G->T', 'G2:M3488:8687693T->A', 'G2:PF2909:13205148A->G', 'G2:PF3119:23739606G->T', 'G2:Y380:28799209T->Chet', 'G:CTS373:6716150T->C', 'G:CTS995:7132348G->C', 'G:CTS1612:13987230A->G', 'G:CTS2120:14188094G->T', 'G:CTS2125:14190447A->G', 'G:CTS2136:14195292A->G', 'G:CTS2517:14338503C->T', 'G:CTS4101:15397649A->G', 'G:CTS4523:15693336G->A', 'G:CTS4749:15797043A->G', 'G:CTS5317:16203361G->C', 'G:CTS5640:16408569G->A', 'G:CTS6483:16929270C->T', 'G:CTS9710:19033112G->A', 'G:CTS9894:19124322A->T', 'G:CTS11907:23343857C->G', 'G:L154:8614138T->G', 'G:L402:15204708T->G', 'G:M3264:8318375G->T', 'G:M3266:8422993T->A', 'G:M3274:8865637G->A', 'G:M3464:7537950C->T', 'G:M3466:7614386G->A', 'G:M3470:7830068T->C', 'G:M3471:7840218C->A', 'G:M3580:21162869C->G', 'G:M3582:21334507G->T', 'G:M3600:21954611G->A', 'G:S1435:13658486C->G', 'G2a2b2a3:Z39318:8591817A->G', 'G2a2b:CTS1180:7256000A->G', 'G2a:CTS6026:16620480C->T', 'G2a:CTS6753:17090976C->T', 'G2a:F1980:15660640C->T', 'G:CTS1010:7143549C->T', 'G:CTS4479:15667235G->A', 'G:CTS5757:16469840A->G', 'G:CTS10706:22714204G->T', 'G:CTS12654:28658660G->T', 'G:S8863:4179056G->A', 'G2a:CTS9318:18819146T->A', 'G2a:CTS11463:23122426G->A', 'G:CTS282:2871867A->G', 'G:CTS5658:16419934T->C', 'G:M3248:7565637G->A', 'G:CTS189:2795691G->A', 'G:F3359:22834341C->T', 'G2a2b2a:PF3330:8687649G->C', 'G2a2b:F2908:18960485C->G', 'G2a2b:Z3238:10007773G->Ahet', 'G:M3591:21626642G->T']
mitopathos -