I5236

FASTA

Metadata

Reference

Data

identifier	I5236
alternative_identifiers	['PADN_12']
country	Serbia
continent	Europe
region	Balkans
culture	Hunter-Gatherer
epoch	Mesolithic
group	HGS
comment	-
latitude	44.599998474121094
longitude	22.010000228881836
sex	M
site	Padina
site_detail	-
mt_hg	U5a2d
ychr_hg	I2a1
year_from	-8290
year_to	-7825
date_detail	8290-7825 calBCE (8943±77 BP, BM-1146)
bp	8943±77
c14_lab_code	BM-1146
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['I:CTS1800:14073053G->A', 'I:CTS2193:14214481G->T', 'I:CTS2514:14337364T->C', 'I:CTS4088:15389836T->C', 'I:CTS4209:15479899T->A', 'I:CTS4273:15536870C->T', 'I:CTS6265:16780748C->G', 'I:CTS7502:17511797A->G', 'I:CTS7831:17692855T->A', 'I:CTS8963:18582617C->T', 'I:CTS10941:22845794A->G', 'I:FGC2412:21689728A->G', 'I:FGC2413:8262092C->T', 'I:FGC2415:13835003T->C', 'I:FI2:8382265C->G', 'I:L503:21359407C->G', 'I:L578:8267857G->A', 'I:L758:8536868C->G', 'I:L846:7856500C->T', 'I:PF3627.2:6662712C->T', 'I:PF3640:7681156T->A', 'I:PF3641:7688470T->C', 'I:PF3660:8466652G->A', 'I:PF3661:8484606C->A', 'I:PF3794:21067903C->T', 'I:PF3796:21119888G->T', 'I:CTS6231:16751000C->T', 'I2:PF3664:8567995G->A', 'I:CTS88:2723755G->A', 'I:CTS4340:15595624G->A', 'I:CTS5946:16567253A->G', 'I:CTS8742:18172947A->G', 'I:CTS8876:18257568G->A', 'I:CTS9860:19104986G->A', 'I:FGC2416:7642823G->T', 'I:FGC7049:22459264G->A', 'I:L41:19048602G->A', 'I:L772:15615533C->A', 'I:P38:14484379A->C', 'I:PF3797:21130059A->G', 'I:PF3806:21525069G->A', 'I:PF3814:21839183A->G', 'I:PF3817:21939618G->A', 'I:PF3836:22525421T->G', 'I:Z16985:13804066G->C', 'I2a1:P37.2:14491684T->C', 'I2:L68:18700150C->T', 'I:CTS4848:15862842C->T', 'I:CTS7540:17525137A->G', 'I:CTS7593:17548890G->A', 'I:FI3:8485677C->A', 'I:PF3742:16354708G->A', 'I:CTS5650:16415916A->G', 'I:FGC7050:22479907A->T', 'I:PF3828:22458430C->T', 'I:PF3837:22573702G->A', 'I:CTS9269:18789763C->T', 'I:PF3649:8046731A->C', 'I:CTS4752:15799074C->T', 'I:PF3642:7712917A->T', 'I:CTS8300:17924382T->A', 'I:PF3803:21452125A->Ghet']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]