I5237

FASTA

Metadata

Reference

Data

identifier I5237
alternative_identifiers ['PADN_14']
country Serbia
continent Europe
region Balkans
culture Hunter-Gatherer
epoch Mesolithic
group HGS
comment -
latitude 44.599998474121094
longitude 22.010000228881836
sex M
site Padina
site_detail -
mt_hg U5a2a
ychr_hg R1b1a(xR1b1a1a,xR1b1a1a2)
year_from -9500
year_to -6200
date_detail 9500-6200 BCE
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps ['R:CTS3622:15078469C->G', 'R:F459:18017528G->T', 'R:L1347:22818334C->T', 'R1:CTS2565:14366723C->T', 'R1:CTS5611:16394489T->G', 'R1:L875:16742224A->G', 'R:CTS8311:17930099C->A', 'R:F82:7548900G->A', 'R:M651:9889199G->A', 'R:M718:17334694G->T', 'R:P285:19267344C->A', 'R1b1a:CTS4244:15510064T->G', 'R:P224:17285993C->T', 'R1b1a:FGC36:13822833G->T', 'R1b1a:L761:16773870A->G', 'R1:CTS3321:14829196C->T', 'R1:CTS997:7132713G->A', 'R1:P238:7771131G->A', 'R1:P242:7647357G->A', 'R1:P294:7570822G->C', 'R:CTS6417:16882568T->C', 'R:CTS7876:17722802G->A', 'R:F33:6701239G->A', 'R:F63:7177189G->A', 'R:F295:15594523A->G', 'R:F652:23631629C->A', 'R:FGC1168:15667208G->C', 'R:L1225:22733758C->G', 'R:M734:18066156C->T', 'R:M799:23134896C->T', 'R:P227:21409706G->C', 'R1b1:L1349:22722580T->C', 'R1b1a:PF6271:23984056G->A', 'R1b1:PF6248:8110520T->A', 'R1b1a:A702:10038192G->A', 'R1b1a:CTS7585:17545608G->T', 'R1b1a:PF6263:21159055C->A', 'R1b1:CTS2134:14193384G->A', 'R1b1:L780:21183643A->G', 'R1b1:L822:7960019G->A', 'R1b1:M415:9170545C->A', 'R1b1:CTS2229:14226692T->A', 'R1b1a:CTS8436:18026855G->A', 'R1b1a:FGC41:7900883C->A', 'R1b1a:L1345:21558298G->T', 'R1b1a:FGC35:18407611C->T', 'R1:CTS916:7084535G->A', 'R1b1:PF6250:8439542G->A']
mitopathos [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '228A', 'position': 228, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Low VO2max response']}]