| identifier |
I5240 |
| alternative_identifiers |
['PADN_22'] |
| country |
Serbia |
| continent |
Europe |
| region |
Balkans |
| culture |
Hunter-Gatherer |
| epoch |
Mesolithic |
| group |
HGS |
| comment |
- |
| latitude |
44.599998474121094 |
| longitude |
22.010000228881836 |
| sex |
M |
| site |
Padina |
| site_detail |
- |
| mt_hg |
U5a1c |
| ychr_hg |
R1b1a(xR1b1a1a,xR1b1a1a2) |
| year_from |
-9140 |
| year_to |
-8570 |
| date_detail |
9140-8570 calBCE (9469±70 BP, PSUAMS-2377, corrected for Freshwater Reservoir Effect) |
| bp |
9469±70 |
| c14_lab_code |
PSUAMS-2377, |
| c14_sample_tag |
True |
| c14_layer_tag |
- |
| avg_coverage |
- |
| sequence_source |
bam |
| reference |
Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203.
(link)
|
| data_link |
https://www.ebi.ac.uk/ena/data/view/PRJEB22652
|
| ychr_snps |
['R:CTS3622:15078469C->G', 'R:F459:18017528G->T', 'R:L1347:22818334C->T', 'R:M613:7133986G->C', 'R:M764:21263029G->A', 'R1:CTS2565:14366723C->T', 'R1:L875:16742224A->G', 'R:CTS8311:17930099C->A', 'R:M651:9889199G->A', 'R1b1a:CTS4244:15510064T->G', 'R:P224:17285993C->T', 'R1b1a:FGC36:13822833G->T', 'R1:CTS3321:14829196C->T', 'R1:CTS997:7132713G->A', 'R1:CTS8116:17839981G->A', 'R1:F93:7671535C->T', 'R1:M306:22750583C->A', 'R1:P233:21166358T->G', 'R1:P236:17782178C->G', 'R1:P238:7771131G->A', 'R1:P242:7647357G->A', 'R1:P294:7570822G->C', 'R:CTS5815:16491135C->T', 'R:CTS7876:17722802G->A', 'R:CTS7880:17723850C->T', 'R:F33:6701239G->A', 'R:F63:7177189G->A', 'R:F295:15594523A->G', 'R:F652:23631629C->A', 'R:FGC1168:15667208G->C', 'R:L1225:22733758C->G', 'R:M734:18066156C->T', 'R:P227:21409706G->C', 'R:CTS2913:14561760A->G', 'R1b1:L1349:22722580T->C', 'R1b1a:CTS8612:18109555C->A', 'R1b1a:PF6271:23984056G->A', 'R1b1:L278:18914441C->T', 'R1b:M343:2887824C->A', 'R1:P225:15590342G->T', 'R:F154:8558505T->C', 'R:CTS11075:22934109A->G', 'R1b1a:A702:10038192G->A', 'R1b1a:PF6263:21159055C->A', 'R1b1:CTS2134:14193384G->A', 'R1b1:L822:7960019G->A', 'R1b1a:CTS8436:18026855G->A', 'R1b1a:L1345:21558298G->T', 'R1:F102:7854412A->G', 'R1:CTS916:7084535G->A', 'R1b1:PF6250:8439542G->A']
|
| mitopathos |
[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '7080C', 'position': 7080, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CO1'], 'diseases': ['Prostate Cancer']}]
|