I5358

FASTA

Metadata

Reference

Data

identifier	I5358
alternative_identifiers	['29.607/12']
country	Great Britain
continent	Europe
region	British Isles
culture	Wales_N
epoch	Neolithic
group	NEBI
comment	-
latitude	53.0587043762207
longitude	-3.2450859546661377
sex	F
site	Rhos Ddigre, Llanarmon-yn-Iâl, Denbighshire, Wales
site_detail	-
mt_hg	K1a1
ychr_hg	-
year_from	-3080
year_to	-2904
date_detail	3080-2904 calBCE (4334±27 BP, OxA-17563)
bp	4334±27
c14_lab_code	OxA-17563
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	82.21209716796875
sequence_source	bam
reference	Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link	http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps	-
mitopathos	[{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '114T', 'position': 114, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['BD-associated']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]