I5371
FASTA
Metadata
Reference
Data
| identifier | I5371 |
|---|---|
| alternative_identifiers | ['ORC_II_95.2'] |
| country | Great Britain |
| continent | Europe |
| region | British Isles |
| culture | Scotland_N |
| epoch | Neolithic |
| group | NEBI |
| comment | - |
| latitude | 56.41456604003906 |
| longitude | -5.469178199768066 |
| sex | F |
| site | Raschoille Cave, Oban, Argyll and Bute, Scotland |
| site_detail | - |
| mt_hg | H4a1a2a |
| ychr_hg | - |
| year_from | -4000 |
| year_to | -3300 |
| date_detail | 4000-3300 BCE |
| bp | - |
| c14_lab_code | - |
| c14_sample_tag | - |
| c14_layer_tag | - |
| avg_coverage | 87.34619903564453 |
| sequence_source | bam |
| reference | Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link) |
| data_link | http://www.ebi.ac.uk/ena/data/view/PRJEB23635 |
| ychr_snps | - |
| mitopathos | [{'allele': '13708A', 'position': 13708, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND5'], 'diseases': ['LHON / Increased MS risk / higher freq in PD-ADS']}, {'allele': '14582G', 'position': 14582, 'status': 'Reported: individually neutral variants causing LHON in combination', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND6'], 'diseases': ['LHON synergistic combo 14258A + 14582G']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}] |