| identifier |
I5401 |
| alternative_identifiers |
['HJDK_8'] |
| country |
Serbia |
| continent |
Europe |
| region |
Balkans |
| culture |
Hunter-Gatherer |
| epoch |
Mesolithic |
| group |
HGS |
| comment |
- |
| latitude |
44.63999938964844 |
| longitude |
22.299999237060547 |
| sex |
M |
| site |
Hadučka Vodenica |
| site_detail |
- |
| mt_hg |
U5a1 |
| ychr_hg |
I2a2 |
| year_from |
-7076 |
| year_to |
-6699 |
| date_detail |
7076-6699 calBCE (8016±58 BP, OxA-13613, corrected for Freshwater Reservoir Effect) |
| bp |
8016±58 |
| c14_lab_code |
OxA-13613, |
| c14_sample_tag |
True |
| c14_layer_tag |
- |
| avg_coverage |
- |
| sequence_source |
bam |
| reference |
Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203.
(link)
|
| data_link |
https://www.ebi.ac.uk/ena/data/view/PRJEB22652
|
| ychr_snps |
['I2:M438:16638804A->G', 'I:CTS1800:14073053G->A', 'I:CTS2387:14286853T->C', 'I:CTS7469:17497181C->A', 'I:CTS8420:18018313C->A', 'I:FGC2412:21689728A->G', 'I:FGC2415:13835003T->C', 'I:L578:8267857G->A', 'I:L1197:14974451C->T', 'I:PF3627.2:6662712C->T', 'I:PF3660:8466652G->A', 'I:PF3665:8643763A->G', 'I:PF3796:21119888G->T', 'I:CTS6231:16751000C->T', 'I:M258:15023364T->C', 'I:CTS5946:16567253A->G', 'I:CTS6497:16939794A->T', 'I:CTS11441:23113271C->G', 'I:FGC2416:7642823G->T', 'I:FGC7049:22459264G->A', 'I:CTS4848:15862842C->T', 'I:PF3742:16354708G->A', 'I:CTS5650:16415916A->G', 'I:CTS8345:17949402C->G', 'I:CTS7329:17424807C->T', 'I2a2:P217:7628484C->T', 'I:PF3649:8046731A->C', 'I:PF3809:21556106G->A', 'I2a2:L35:22725379C->A', 'I2a2:L368:6931594C->T', 'I:PF3803:21452125A->G', 'I2a2:L181:19077754G->T']
|
| mitopathos |
[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16390A', 'position': 16390, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['POAG - potential for association']}]
|