I5402

FASTA

Metadata

Reference

Data

identifier	I5402
alternative_identifiers	['HJDK_15(1)']
country	Serbia
continent	Europe
region	Balkans
culture	Hunter-Gatherer
epoch	Mesolithic
group	HGS
comment	-
latitude	44.63999938964844
longitude	22.299999237060547
sex	M
site	Hadučka Vodenica
site_detail	-
mt_hg	U5a1c1
ychr_hg	I2a2a1b
year_from	-6361
year_to	-6050
date_detail	6361-6050 calBCE (7315±63 BP, OxA-16942, corrected for Freshwater Reservoir Effect)
bp	7315±63
c14_lab_code	OxA-16942,
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['I:CTS2193:14214481G->T', 'I:CTS4209:15479899T->A', 'I:CTS4273:15536870C->T', 'I:CTS6265:16780748C->G', 'I:CTS7469:17497181C->A', 'I:CTS7502:17511797A->G', 'I:CTS7831:17692855T->A', 'I:CTS8420:18018313C->A', 'I:CTS8963:18582617C->T', 'I:CTS10058:19233673A->G', 'I:CTS10941:22845794A->G', 'I:CTS11540:23156725C->T', 'I:FGC2413:8262092C->T', 'I:FI2:8382265C->G', 'I:L503:21359407C->G', 'I:L578:8267857G->A', 'I:L758:8536868C->G', 'I:L1197:14974451C->T', 'I:PF3627.2:6662712C->T', 'I:PF3640:7681156T->A', 'I:PF3641:7688470T->C', 'I:PF3660:8466652G->A', 'I:PF3661:8484606C->A', 'I:PF3665:8643763A->G', 'I:PF3794:21067903C->T', 'I:PF3796:21119888G->T', 'I:Z16987:22243817A->Ghet', 'I:CTS6231:16751000C->T', 'I:FI4:8873160G->T', 'I:M258:15023364T->C', 'I2:PF3664:8567995G->A', 'I:CTS88:2723755G->A', 'I:CTS3517:14986989T->G', 'I:CTS5946:16567253A->G', 'I:CTS6497:16939794A->T', 'I:CTS8876:18257568G->A', 'I:CTS9860:19104986G->A', 'I:FGC2416:7642823G->T', 'I:L772:15615533C->A', 'I:M1460:21862684A->C', 'I:P38:14484379A->C', 'I:PF3797:21130059A->G', 'I:PF3800:21402723A->G', 'I:PF3814:21839183A->G', 'I:PF3815:21841289G->T', 'I:PF3836:22525421T->G', 'I:Z16985:13804066G->C', 'I2:L68:18700150C->T', 'I:CTS4848:15862842C->T', 'I:CTS7540:17525137A->G', 'I:CTS7593:17548890G->A', 'I:CTS8333:17940414G->A', 'I:FI3:8485677C->A', 'I:PF3742:16354708G->A', 'I:CTS5650:16415916A->G', 'I:CTS8345:17949402C->G', 'I:PF3828:22458430C->T', 'I:PF3837:22573702G->A', 'I:CTS7329:17424807C->T', 'I:CTS8545:18078759T->A', 'I:L755:8465165C->T', 'I2a2a:L34:7716262A->C', 'I2a2:P217:7628484C->T', 'I:CTS9269:18789763C->T', 'I:PF3649:8046731A->C', 'I:PF3666:8728974T->G', 'I:PF3809:21556106G->A', 'I2a2:L368:6931594C->T', 'I2a2a:P223:16699334C->G', 'I2a2a1b:CTS10100:19255890G->A', 'I2a2a:P221:8353707C->A', 'I2a2:L37:17516123T->C', 'I2a2:L181:19077754G->T', 'I2a2:P218:17493630T->G', 'I:FGC2417:10051801G->A', 'I2a2a1b:CTS10057:19232160C->T', 'I2a2:P216:13992338C->G', 'I:CTS9264:18786174G->A', 'I:PF3639:7570370A->G']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]