| identifier |
I5408 |
| alternative_identifiers |
['OSTCOR_24'] |
| country |
Romania |
| continent |
Europe |
| region |
Balkans |
| culture |
Hunter-Gatherer |
| epoch |
Mesolithic |
| group |
HGS |
| comment |
- |
| latitude |
44.52000045776367 |
| longitude |
22.719999313354492 |
| sex |
M |
| site |
Ostrovul Corbului |
| site_detail |
- |
| mt_hg |
K1c |
| ychr_hg |
R1b1a(xR1b1a1a,xR1b1a1a2) |
| year_from |
-6000 |
| year_to |
-5000 |
| date_detail |
6000-5000 BCE |
| bp |
- |
| c14_lab_code |
- |
| c14_sample_tag |
- |
| c14_layer_tag |
- |
| avg_coverage |
- |
| sequence_source |
bam |
| reference |
Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203.
(link)
|
| data_link |
https://www.ebi.ac.uk/ena/data/view/PRJEB22652
|
| ychr_snps |
['R:F459:18017528G->T', 'R:M764:21263029G->A', 'R1:CTS2565:14366723C->T', 'R1:CTS5611:16394489T->G', 'R1:P245:8633545T->C', 'R:CTS207:2810583A->G', 'R:CTS2426:14300457G->A', 'R:CTS8311:17930099C->A', 'R:P285:19267344C->A', 'R:P224:17285993C->T', 'R1b1a:FGC36:13822833G->T', 'R1:F93:7671535C->T', 'R1:M306:22750583C->A', 'R1:P294:7570822G->C', 'R:F33:6701239G->A', 'R:F63:7177189G->A', 'R:F295:15594523A->G', 'R:FGC1168:15667208G->C', 'R:M760:21219443A->G', 'R:M799:23134896C->T', 'R:P227:21409706G->C', 'R:F765:24360964G->A', 'R1b1:L1349:22722580T->C', 'R1b:M343:2887824C->A', 'R1b1a:A702:10038192G->A', 'R1b1a:PF6263:21159055C->A', 'R1b1:L780:21183643A->G', 'R1b1:M415:9170545C->A']
|
| mitopathos |
[{'allele': '10398G', 'position': 10398, 'status': 'Reported / lineage L & M marker / also hg IJK', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['PD protective factor / longevity / altered cell pH / metabolic syndrome / breast cancer risk / Leigh Syndrome risk / ADHD / cognitive decline / SCA2 age of onset / Fuchs endothelial corneal dystrophy']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '9055A', 'position': 9055, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ATP6'], 'diseases': ['PD protective factor']}]
|