I5411

FASTA

Metadata

Reference

Data

identifier	I5411
alternative_identifiers	['SCCL_12']
country	Romania
continent	Europe
region	Balkans
culture	Hunter-Gatherer
epoch	Mesolithic
group	HGS
comment	-
latitude	44.630001068115234
longitude	22.610000610351562
sex	M
site	Schela Cladovei
site_detail	-
mt_hg	U5a1c1
ychr_hg	R1b1a(xR1b1a1a,xR1b1a1a2)
year_from	-7000
year_to	-6300
date_detail	7000-6300 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['R:F459:18017528G->T', 'R:L1347:22818334C->T', 'R:M613:7133986G->C', 'R:M764:21263029G->A', 'R1:L875:16742224A->G', 'R1:P286:17716251C->T', 'R:CTS207:2810583A->G', 'R:CTS8311:17930099C->A', 'R1b1a:CTS4244:15510064T->G', 'R1b1:PF6272:23992762C->A', 'R:L747:16615413G->T', 'R:P224:17285993C->T', 'R1b1a:FGC36:13822833G->T', 'R1b1a:L761:16773870A->G', 'R1:CTS997:7132713G->A', 'R1:F93:7671535C->T', 'R1:P231:9989615A->G', 'R1:P236:17782178C->G', 'R1:P238:7771131G->A', 'R1:P294:7570822G->C', 'R:CTS5815:16491135C->T', 'R:CTS6417:16882568T->C', 'R:F33:6701239G->A', 'R:F63:7177189G->A', 'R:F295:15594523A->G', 'R:F356:16629782T->C', 'R:FGC1168:15667208G->C', 'R:M734:18066156C->T', 'R:M760:21219443A->G', 'R:M799:23134896C->T', 'R:P227:21409706G->C', 'R:CTS10663:22687547A->T', 'R1:CTS3123:14674176A->C', 'R1b1a:CTS8612:18109555C->A', 'R1b1a:L1068:21528257T->C', 'R1b1a:PF6271:23984056G->A', 'R1b:M343:2887824C->A', 'R1:P225:15590342G->T', 'R1b1a:PF6263:21159055C->A', 'R1b1:CTS3625:15080010C->T', 'R1b1:L780:21183643A->G', 'R1b1:L822:7960019G->A', 'R1b1a:CTS8436:18026855G->A', 'R1b1a:FGC41:7900883C->A', 'R1b1:CTS46:2686555G->A', 'R1b1:CTS910:7081561C->T', 'R1b1a:PF6249:8214827C->T', 'R1b1:PF6255:14273103T->G']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]