I5436

FASTA

Metadata

Reference

Data

identifier I5436
alternative_identifiers ['SCCL_43']
country Romania
continent Europe
region Balkans
culture Hunter-Gatherer
epoch Mesolithic
group HGS
comment -
latitude 44.630001068115234
longitude 22.610000610351562
sex F
site Schela Cladovei
site_detail -
mt_hg U5a2
ychr_hg -
year_from -7451
year_to -6698
date_detail 7451-6698 calBCE
bp -
c14_lab_code -
c14_sample_tag True
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps -
mitopathos [{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]