I5524

FASTA

Metadata

Reference

Data

identifier I5524
alternative_identifiers ['F0224']
country Germany
continent Europe
region central Europe
culture Bell Beaker
epoch Copper Age
group BBC
comment -
latitude 48.66299819946289
longitude 12.706999778747559
sex F
site Landau an der Isar, Bavaria
site_detail -
mt_hg H72
ychr_hg -
year_from -2500
year_to -2000
date_detail 2500-2000 BCE
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag -
avg_coverage 300.8529968261719
sequence_source bam
reference Olalde et al. 2018. The Beaker phenomenon and the genomic transformation of northwest Europe. Nature, 555(7695), 190-196. (link)
data_link http://www.ebi.ac.uk/ena/data/view/PRJEB23635
ychr_snps -
mitopathos [{'allele': '16093C', 'position': 16093, 'status': 'Reported', 'homoplasmy': '-', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Cyclic Vomiting Syndrome']}, {'allele': '15927A', 'position': 15927, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['LHON / Multiple Sclerosis / DEAF1555 increased penetrance / CHD']}, {'allele': '310C', 'position': 310, 'status': 'Reported', 'homoplasmy': '<NA>', 'heteroplasmy': '<NA>', 'locus': ['MT-CR'], 'diseases': ['Possible protective factor for normal tension glaucoma']}]