I5878

FASTA

Metadata

Reference

Data

identifier	I5878
alternative_identifiers	['Grave 41']
country	Ukraine
continent	Europe
region	Pontic steppe
culture	Ukraine_Neolithic
epoch	Neolithic
group	NEUk
comment	father_or_son_of_S5883.E1.L1
latitude	48.90999984741211
longitude	33.7599983215332
sex	M
site	Dereivka
site_detail	Site I
mt_hg	U4b1a1a
ychr_hg	R1
year_from	-5299
year_to	-5076
date_detail	5299-5076 calBCE (6230±20 BP, PSUAMS-2831)
bp	6230±20
c14_lab_code	PSUAMS-2831
c14_sample_tag	True
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['R1:CTS3321:14829196C->T']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12297C', 'position': 12297, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['Dilated Cardiomyopathy / Leigh Syndrome / Failure to Thrive & LA']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '15693C', 'position': 15693, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['Possibly LVNC cardiomyopathy-associated']}, {'allele': '195C', 'position': 195, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['BD-associated / melanoma pts']}, {'allele': '499A', 'position': 499, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CR'], 'diseases': ['Endometriosis']}]