I5879

FASTA

Metadata

Reference

Data

identifier	I5879
alternative_identifiers	['Grave 78']
country	Ukraine
continent	Europe
region	Pontic steppe
culture	Ukraine_Neolithic
epoch	Neolithic
group	NEUk
comment	brother_of_S5890.E1.L1_father_or_son_of_I3718
latitude	48.90999984741211
longitude	33.7599983215332
sex	M
site	Dereivka
site_detail	Site I
mt_hg	U5a1b
ychr_hg	R1b1(xR1b1a1a2)
year_from	-5500
year_to	-4800
date_detail	5500-4800 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['R:CTS8311:17930099C->A', 'R1b1:L278:18914441C->T', 'R1b:M343:2887824C->A', 'R1b1:CTS2134:14193384G->A', 'R1:CTS7085:17275703G->A']
mitopathos	[{'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '14693G', 'position': 14693, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TE'], 'diseases': ['MELAS / LHON / DEAF / hypertension helper']}, {'allele': '16192T', 'position': 16192, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]