I5888

FASTA

Metadata

Reference

Data

identifier	I5888
alternative_identifiers	['Grave 27']
country	Ukraine
continent	Europe
region	Pontic steppe
culture	Ukraine_Neolithic
epoch	Neolithic
group	NEUk
comment	father_or_son_of_S5875.E1.L1
latitude	48.90999984741211
longitude	33.7599983215332
sex	M
site	Dereivka
site_detail	Site I
mt_hg	U5b2b1
ychr_hg	I2a2
year_from	-5500
year_to	-4800
date_detail	5500-4800 BCE
bp	-
c14_lab_code	-
c14_sample_tag	-
c14_layer_tag	-
avg_coverage	-
sequence_source	bam
reference	Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link	https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps	['I:CTS4209:15479899T->A', 'I:PF3794:21067903C->T', 'I:CTS8345:17949402C->G', 'I:PF3837:22573702G->A', 'I2a2:L37:17516123T->C']
mitopathos	[{'allele': '10237C', 'position': 10237, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND3'], 'diseases': ['LHON']}, {'allele': '11467G', 'position': 11467, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND4'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12308G', 'position': 12308, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-TL2'], 'diseases': ['CPEO / Stroke / CM / Breast & Renal & Prostate Cancer Risk / Altered brain pH /sCJD']}, {'allele': '12372A', 'position': 12372, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Altered brain pH / sCJD patients']}, {'allele': '12634G', 'position': 12634, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-ND5'], 'diseases': ['Thyroid Cancer Cell Line']}, {'allele': '13637G', 'position': 13637, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND5'], 'diseases': ['Possible LHON factor']}, {'allele': '150T', 'position': 150, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '+', 'locus': ['MT-CR'], 'diseases': ['Longevity / Cervical Carcinoma / HPV infection risk']}, {'allele': '15497A', 'position': 15497, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-CYB'], 'diseases': ['EXIT / Obesity']}, {'allele': '16270T', 'position': 16270, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-CR'], 'diseases': ['Melanoma patients']}]