I5957

FASTA

Metadata

Reference

Data

identifier I5957
alternative_identifiers ['Grave 10']
country Ukraine
continent Europe
region Pontic steppe
culture Ukraine_Neolithic
epoch Neolithic
group NEUk
comment -
latitude 47.95000076293945
longitude 35.38999938964844
sex M
site Volniensky, Vilnianka
site_detail -
mt_hg T2
ychr_hg I
year_from -6500
year_to -4000
date_detail 6500-4000 BCE
bp -
c14_lab_code -
c14_sample_tag -
c14_layer_tag -
avg_coverage -
sequence_source bam
reference Mathieson et al. 2018. The genomic history of southeastern Europe. Nature, 555(7695), 197-203. (link)
data_link https://www.ebi.ac.uk/ena/data/view/PRJEB22652
ychr_snps ['I:CTS4209:15479899T->A', 'I:CTS5946:16567253A->G', 'I:PF3829:22458740A->G', 'I:PF3837:22573702G->A']
mitopathos [{'allele': '11251G', 'position': 11251, 'status': 'Reported', 'homoplasmy': 'nr', 'heteroplasmy': 'nr', 'locus': ['MT-ND4'], 'diseases': ['Reduced risk of PD']}, {'allele': '15928A', 'position': 15928, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-TT'], 'diseases': ['Multiple Sclerosis / idiopathic repeat miscarriage / AD protection']}, {'allele': '4216C', 'position': 4216, 'status': 'Conflicting reports', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND1'], 'diseases': ['LHON / Insulin Resistance /possible adaptive high altitude variant / miscarriage']}, {'allele': '4917G', 'position': 4917, 'status': 'Reported', 'homoplasmy': '+', 'heteroplasmy': '-', 'locus': ['MT-ND2'], 'diseases': ['LHON / Insulin Resistance / AMD / NRTI-PN']}]